Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.535s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.262s passed
testCountVariantsWithIntervals[10](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.262s passed
testCountVariantsWithIntervals[11](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.246s passed
testCountVariantsWithIntervals[1](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.265s passed
testCountVariantsWithIntervals[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.254s passed
testCountVariantsWithIntervals[3](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.233s passed
testCountVariantsWithIntervals[4](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.248s passed
testCountVariantsWithIntervals[5](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.259s passed
testCountVariantsWithIntervals[6](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.241s passed
testCountVariantsWithIntervals[7](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.258s passed
testCountVariantsWithIntervals[8](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.248s passed
testCountVariantsWithIntervals[9](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.263s passed
testNoNPRWhenOutputIsUnspecified 0.097s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.097s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.099s passed
test[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.203s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 27, 2025 at 4:00:12 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:12 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:14 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:15 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:15 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:15 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:15 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:16 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:16 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:16 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:16 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:17 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:17 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:17 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:17 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352
[May 27, 2025 at 4:00:18 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1784676352