Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.readorientation > LearnReadOrientationModelIntegrationTest
4

tests
0

failures
0

ignored
38.636s

duration
100%

successful

Tests

Test Duration Result
testFewSites 1.410s passed
testOnRealBam[0](1) 18.107s passed
testOnRealBam[1](5) 18.810s passed
testTwoSamples 0.309s passed

Standard error

[May 27, 2025 at 4:08:00 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:01 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:02 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:02 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:02 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:02 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:03 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:20 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:22 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:38 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208