Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.308s |
passed |
| testASEReadCounterImproperPairs |
3.168s |
passed |
| testASEReadCounterMinDepth70 |
0.196s |
passed |
| testASEReadCounterMultipleContexts |
0.136s |
passed |
| testASEReadCounterNonRefAllele |
0.144s |
passed |
| testASEReadCounterWarnings |
0.202s |
passed |
| testASEReadCounterWithCountOverlaps |
0.198s |
passed |
| testASEReadCounterWithCountReads |
0.199s |
passed |
| testASEReadCounterWithHighMQ |
0.198s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.197s |
passed |
| testASEReadCounterWithLowMQ |
0.202s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.204s |
passed |
Standard output
--------------------------------------------------------------------------------
[16:08:41] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[16:08:42] Executing test ASEReadCounterIntegrationTest:test improper pairs
--------------------------------------------------------------------------------
[16:08:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:46] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:46] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:46] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:46] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:08:46] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 4:08:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:45 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:08:47 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208