Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.293s |
passed |
| testSplitsFixNDN |
0.119s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.505s |
passed |
| testSplitsTargetRegionFunctionality |
0.239s |
passed |
| testSplitsWithOverhangs |
0.458s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.385s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.356s |
passed |
| testSplitsWithOverhangsNotClipping |
0.348s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.394s |
passed |
Standard output
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[16:09:13] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[16:09:13] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:09:14] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:09:15] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[16:09:15] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[16:09:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[16:09:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[16:09:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 4:09:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:09:13 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:09:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1287651328
[May 27, 2025 at 4:09:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1287651328
[May 27, 2025 at 4:09:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=754974720
[May 27, 2025 at 4:09:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=643825664
[May 27, 2025 at 4:09:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=643825664
[May 27, 2025 at 4:09:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=643825664
[May 27, 2025 at 4:09:17 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=616562688