Package org.broadinstitute.hellbender.tools.spark.sv.integration
|
100%
successful |
Ignored tests
- CpxVariantReInterpreterSparkIntegrationTest. testRunHDFS[0](org.broadinstitute.hellbender.tools.spark.sv.integration.CpxVariantReInterpreterSparkIntegrationTest$CpxVariantReInterpreterSparkIntegrationTestArgs@57e7c77d)
- DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest. testDiscoverVariantsRunnableMiniCluster[0](org.broadinstitute.hellbender.tools.spark.sv.integration.DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest$DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTestArgs@7eafe06c)
- FindBreakpointEvidenceSparkIntegrationTest. testFindBreakpointRunnableMiniCluster[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew3056642653499986063', bam-coverage='10.0'})
- StructuralVariationDiscoveryPipelineSparkIntegrationTest. testSVDiscoverPipelineRunnableMiniCluster[0](StructuralVariationDiscoveryPipelineSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-fef-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', cnv-calls-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/hg19_DEL_cnv_calls.vcf', output-dir='/tmp/new3609090210776063029'})
Classes
| Class | Tests | Failures | Ignored | Duration | Success rate |
|---|---|---|---|---|---|
| CpxVariantReInterpreterSparkIntegrationTest | 2 | 0 | 1 | 1.320s | 100% |
| DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest | 2 | 0 | 1 | 0.357s | 100% |
| ExtractOriginalAlignmentRecordsByNameSparkIntegrationTest | 2 | 0 | 0 | 0.814s | 100% |
| FindBreakpointEvidenceSparkIntegrationTest | 2 | 0 | 1 | 2.601s | 100% |
| StructuralVariationDiscoveryPipelineSparkIntegrationTest | 2 | 0 | 1 | 3.066s | 100% |
| SvDiscoverFromLocalAssemblyContigAlignmentsSparkIntegrationTest | 2 | 0 | 0 | 5.459s | 100% |