Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
2.908s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.010s	passed
testGetCompatibleHeader	0.019s	passed
testGetConflictingHeader	0.010s	passed
testIteratorOverlapping	0.014s	passed
testNoDictionaryForAllInputs	0.013s	passed
testNoDictionaryForOneInput	0.013s	passed
testNoDictionaryForOnlyInput	0.009s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.009s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.009s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.015s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.011s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.009s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.008s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.009s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.009s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test7ba7d477-bbc7-48d9-b38d-f84747fdb7efdir/remote_bundle.json, 1, 14)	1.449s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa53038f3-e987-48d4-b4a0-564d94392439dir/remote_bundle.json, 2:200-600, 3)	1.292s	passed
Standard error

15:32:54.180 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.181 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.181 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.181 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.181 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.181 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.181 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.181 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.181 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.181 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.181 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.182 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.182 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.182 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.182 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.182 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.182 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.183 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:32:54.184 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.190 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.190 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.190 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.191 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.191 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.191 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.191 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.191 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.191 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.191 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.191 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.191 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.191 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.191 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.192 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.192 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.192 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.193 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.195 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:32:54.199 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.200 INFO  ProgressMeter - Starting traversal
15:32:54.200 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.203 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
15:32:54.203 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:32:54.203 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.209 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.209 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.209 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.209 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.209 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.209 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.210 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.210 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.210 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.210 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.210 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.210 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.210 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.210 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.211 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:32:54.213 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
15:32:54.214 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.220 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:32:54.220 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.220 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.220 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.220 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.221 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.221 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:32:54.221 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
15:32:54.221 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.221 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.221 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.221 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.221 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
15:32:54.222 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
15:32:54.222 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
15:32:54.222 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
15:32:54.222 INFO  TestMultiVariantWalkerIterator - Initializing engine
15:32:54.223 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
15:32:54.225 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
15:32:54.227 INFO  TestMultiVariantWalkerIterator - Done initializing engine
15:32:54.227 INFO  ProgressMeter - Starting traversal
15:32:54.227 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.228 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
15:32:54.228 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
15:32:54.228 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.235 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.235 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.235 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.235 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.235 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.235 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.235 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.235 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.236 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.236 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.236 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.236 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.236 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.236 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.236 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.236 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.236 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.237 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
15:32:54.239 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
15:32:54.241 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
15:32:54.241 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
15:32:54.241 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.247 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.247 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.247 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.247 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.247 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.247 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.247 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.247 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.248 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.248 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.248 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.248 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.248 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.248 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.248 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.248 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.248 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.249 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.250 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
15:32:54.251 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
15:32:54.252 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.252 INFO  ProgressMeter - Starting traversal
15:32:54.252 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.254 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:32:54.254 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:32:54.254 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.260 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.260 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.260 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.260 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.261 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.261 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.261 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.261 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.261 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.261 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.261 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.261 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.261 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.261 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.261 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.261 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.262 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.262 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
15:32:54.263 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
15:32:54.263 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.263 INFO  ProgressMeter - Starting traversal
15:32:54.263 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.264 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
15:32:54.264 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
15:32:54.264 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.269 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.269 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.270 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.270 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.270 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.270 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.270 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.270 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.270 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.270 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.270 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.270 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.270 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.270 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.270 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.270 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.271 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.272 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:32:54.273 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.273 INFO  ProgressMeter - Starting traversal
15:32:54.273 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.274 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:32:54.274 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:32:54.274 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.279 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.279 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.279 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.279 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.279 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.279 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.279 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.279 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.279 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.279 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.279 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.279 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.280 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.280 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.280 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.280 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.280 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.281 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.282 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.282 INFO  ProgressMeter - Starting traversal
15:32:54.282 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.283 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
15:32:54.283 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
15:32:54.283 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.291 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.291 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.291 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.291 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.291 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.291 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.291 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.291 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.291 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.291 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.291 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.292 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.292 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.292 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.292 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.292 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.292 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.293 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.295 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:32:54.297 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.297 INFO  ProgressMeter - Starting traversal
15:32:54.297 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.298 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:32:54.298 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:32:54.298 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.303 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.304 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.304 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.304 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.304 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.304 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.304 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.304 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.304 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.304 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.304 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.304 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.304 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.304 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.305 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.305 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.305 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.306 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
15:32:54.307 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
15:32:54.309 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.309 INFO  ProgressMeter - Starting traversal
15:32:54.309 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.310 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
15:32:54.310 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
15:32:54.310 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.315 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.315 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.315 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.315 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.315 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.315 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.315 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.315 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.315 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.315 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.315 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.316 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.316 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.316 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.316 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.316 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.316 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.317 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
15:32:54.317 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:32:54.318 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.318 INFO  ProgressMeter - Starting traversal
15:32:54.318 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.318 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
15:32:54.319 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
15:32:54.319 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.323 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.323 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.323 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.323 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.323 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.323 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.324 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.324 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.324 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.324 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.324 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.324 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.324 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.324 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.324 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.324 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.324 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.325 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.326 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:32:54.326 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.326 INFO  ProgressMeter - Starting traversal
15:32:54.326 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.326 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
15:32:54.326 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
15:32:54.327 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.331 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.331 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.331 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.331 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.331 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.331 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.331 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.331 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.331 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.331 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.331 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.332 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.332 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.332 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.332 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.332 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.332 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.333 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.334 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:32:54.335 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:32:54.335 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.335 INFO  ProgressMeter - Starting traversal
15:32:54.335 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.336 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
15:32:54.336 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
15:32:54.336 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:54.340 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.340 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:54.340 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:54.340 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:54.340 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:54.340 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:54 PM UTC
15:32:54.340 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.340 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:54.341 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:54.341 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:54.341 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:54.341 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:54.341 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:54.341 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:54.341 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:54.341 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:54.341 INFO  TestMultiVariantWalker - Initializing engine
15:32:54.342 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
15:32:54.343 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
15:32:54.344 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
15:32:54.344 INFO  TestMultiVariantWalker - Done initializing engine
15:32:54.344 INFO  ProgressMeter - Starting traversal
15:32:54.345 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:54.345 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
15:32:54.345 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
15:32:54.345 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:54 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1530920960
15:32:56.261 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:56.261 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:56.261 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:56.262 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:56.262 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:56.262 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:56 PM UTC
15:32:56.262 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:56.262 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:56.262 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:56.262 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:56.263 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:56.263 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:56.263 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:56.263 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:56.263 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:56.263 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:56.263 INFO  TestMultiVariantWalker - Initializing engine
15:32:56.863 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test7ba7d477-bbc7-48d9-b38d-f84747fdb7efdir/interleavedVariants_1.vcf
15:32:57.366 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test7ba7d477-bbc7-48d9-b38d-f84747fdb7efdir/interleavedVariants_2.vcf
15:32:57.611 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
15:32:57.611 INFO  TestMultiVariantWalker - Done initializing engine
15:32:57.611 INFO  ProgressMeter - Starting traversal
15:32:57.611 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:57.702 INFO  ProgressMeter -             unmapped              0.0                    14           9333.3
15:32:57.702 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
15:32:57.702 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:57 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1530920960
15:32:57.708 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:57.708 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
15:32:57.708 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
15:32:57.708 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:32:57.708 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:32:57.709 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 3:32:57 PM UTC
15:32:57.709 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:57.709 INFO  TestMultiVariantWalker - ------------------------------------------------------------
15:32:57.709 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:32:57.709 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:32:57.709 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:32:57.709 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:32:57.709 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
15:32:57.709 INFO  TestMultiVariantWalker - Inflater: IntelInflater
15:32:57.709 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
15:32:57.709 INFO  TestMultiVariantWalker - Requester pays: disabled
15:32:57.709 INFO  TestMultiVariantWalker - Initializing engine
15:32:58.201 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa53038f3-e987-48d4-b4a0-564d94392439dir/interleavedVariants_1.vcf
15:32:58.655 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testa53038f3-e987-48d4-b4a0-564d94392439dir/interleavedVariants_2.vcf
15:32:58.900 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
15:32:58.900 INFO  TestMultiVariantWalker - Done initializing engine
15:32:58.900 INFO  ProgressMeter - Starting traversal
15:32:58.900 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
15:32:58.994 INFO  ProgressMeter -             unmapped              0.0                     3           1914.9
15:32:58.995 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
15:32:58.995 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 3:32:58 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1530920960