Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testEmptyGatkCalledSegmentFile | 0.185s | passed |
| testGatkCalledSegmentFile | 1.287s | passed |
| testHg38CalledCopyRatioSegmentsGatkFile | 3.346s | passed |
| testModelSegmentsGatkFile | 8.730s | passed |
| testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) | 0.109s | passed |
| testSimpleNoOverlap | 0.091s | passed |
Standard error
[May 27, 2025 at 3:40:43 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2063597568 [May 27, 2025 at 3:40:44 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.02 minutes. Runtime.totalMemory()=2063597568 [May 27, 2025 at 3:40:47 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.05 minutes. Runtime.totalMemory()=2231369728 [May 27, 2025 at 3:40:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.14 minutes. Runtime.totalMemory()=2290089984 [May 27, 2025 at 3:40:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2290089984 [May 27, 2025 at 3:40:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2290089984