Class org.broadinstitute.hellbender.tools.spark.PileupSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testFeaturesPileupHdfs[0](false) |
1.738s |
passed |
| testFeaturesPileupHdfs[1](true) |
1.564s |
passed |
| testFeaturesPileup[0](false) |
0.855s |
passed |
| testFeaturesPileup[1](true) |
0.554s |
passed |
| testInsertLengthPileup[0](false) |
0.447s |
passed |
| testInsertLengthPileup[1](true) |
0.351s |
passed |
| testSimplePileup[0](false) |
0.463s |
passed |
| testSimplePileup[1](true) |
0.364s |
passed |
| testVerbosePileup[0](false) |
0.429s |
passed |
| testVerbosePileup[1](true) |
0.344s |
passed |
Standard error
[May 27, 2025 at 3:44:25 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1052770304
[May 27, 2025 at 3:44:26 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1052770304
[May 27, 2025 at 3:44:28 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1052770304
15:44:28.214 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 3:44:29 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1035993088
15:44:29.780 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 3:44:30 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1035993088
[May 27, 2025 at 3:44:30 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1035993088
[May 27, 2025 at 3:44:31 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1035993088
[May 27, 2025 at 3:44:31 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1035993088
[May 27, 2025 at 3:44:31 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1035993088
[May 27, 2025 at 3:44:32 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1035993088