[May 27, 2025 at 3:46:22 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360
[May 27, 2025 at 3:46:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360
[May 27, 2025 at 3:46:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360
15:46:23.338 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.338 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
15:46:23.338 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
15:46:23.338 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:46:23.338 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:46:23.338 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 3:46:23 PM UTC
15:46:23.338 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.338 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.338 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:46:23.338 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:46:23.338 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:46:23.338 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:46:23.338 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
15:46:23.339 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
15:46:23.339 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
15:46:23.339 INFO CollectMultipleMetricsSpark - Requester pays: disabled
15:46:23.339 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
15:46:23.339 INFO CollectMultipleMetricsSpark - Initializing engine
15:46:23.339 INFO CollectMultipleMetricsSpark - Done initializing engine
15:46:23.339 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
WARNING 2025-05-27 15:46:23 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 15:46:23 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
15:46:23.340 INFO MemoryStore - Block broadcast_3408 stored as values in memory (estimated size 37.8 KiB, free 1917.4 MiB)
15:46:23.341 INFO MemoryStore - Block broadcast_3408_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1917.4 MiB)
15:46:23.341 INFO BlockManagerInfo - Added broadcast_3408_piece0 in memory on localhost:43633 (size: 8.4 KiB, free: 1919.3 MiB)
15:46:23.341 INFO SparkContext - Created broadcast 3408 from broadcast at SamSource.java:78
15:46:23.342 INFO MemoryStore - Block broadcast_3409 stored as values in memory (estimated size 306.3 KiB, free 1917.1 MiB)
15:46:23.348 INFO MemoryStore - Block broadcast_3409_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1917.0 MiB)
15:46:23.348 INFO BlockManagerInfo - Added broadcast_3409_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1919.3 MiB)
15:46:23.348 INFO SparkContext - Created broadcast 3409 from newAPIHadoopFile at SamSource.java:108
WARNING 2025-05-27 15:46:23 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 15:46:23 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
15:46:23.350 INFO MemoryStore - Block broadcast_3410 stored as values in memory (estimated size 37.8 KiB, free 1917.0 MiB)
15:46:23.351 INFO MemoryStore - Block broadcast_3410_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1917.0 MiB)
15:46:23.351 INFO BlockManagerInfo - Added broadcast_3410_piece0 in memory on localhost:43633 (size: 8.4 KiB, free: 1919.3 MiB)
15:46:23.351 INFO SparkContext - Created broadcast 3410 from broadcast at SamSource.java:78
15:46:23.352 INFO MemoryStore - Block broadcast_3411 stored as values in memory (estimated size 306.3 KiB, free 1916.7 MiB)
15:46:23.358 INFO MemoryStore - Block broadcast_3411_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1916.6 MiB)
15:46:23.358 INFO BlockManagerInfo - Added broadcast_3411_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1919.2 MiB)
15:46:23.358 INFO SparkContext - Created broadcast 3411 from newAPIHadoopFile at SamSource.java:108
15:46:23.360 INFO FileInputFormat - Total input files to process : 1
15:46:23.364 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
15:46:23.364 INFO DAGScheduler - Got job 892 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
15:46:23.364 INFO DAGScheduler - Final stage: ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
15:46:23.364 INFO DAGScheduler - Parents of final stage: List()
15:46:23.364 INFO DAGScheduler - Missing parents: List()
15:46:23.364 INFO DAGScheduler - Submitting ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
15:46:23.365 INFO MemoryStore - Block broadcast_3412 stored as values in memory (estimated size 34.8 KiB, free 1916.6 MiB)
15:46:23.365 INFO MemoryStore - Block broadcast_3412_piece0 stored as bytes in memory (estimated size 14.6 KiB, free 1916.6 MiB)
15:46:23.365 INFO BlockManagerInfo - Added broadcast_3412_piece0 in memory on localhost:43633 (size: 14.6 KiB, free: 1919.2 MiB)
15:46:23.365 INFO SparkContext - Created broadcast 3412 from broadcast at DAGScheduler.scala:1580
15:46:23.365 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
15:46:23.366 INFO TaskSchedulerImpl - Adding task set 2485.0 with 1 tasks resource profile 0
15:46:23.366 INFO TaskSetManager - Starting task 0.0 in stage 2485.0 (TID 1916) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
15:46:23.366 INFO Executor - Running task 0.0 in stage 2485.0 (TID 1916)
15:46:23.367 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.sam:0+44008
15:46:23.368 INFO Executor - Finished task 0.0 in stage 2485.0 (TID 1916). 946 bytes result sent to driver
15:46:23.369 INFO TaskSetManager - Finished task 0.0 in stage 2485.0 (TID 1916) in 3 ms on localhost (executor driver) (1/1)
15:46:23.369 INFO TaskSchedulerImpl - Removed TaskSet 2485.0, whose tasks have all completed, from pool
15:46:23.369 INFO DAGScheduler - ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.005 s
15:46:23.369 INFO DAGScheduler - Job 892 is finished. Cancelling potential speculative or zombie tasks for this job
15:46:23.369 INFO TaskSchedulerImpl - Killing all running tasks in stage 2485: Stage finished
15:46:23.369 INFO DAGScheduler - Job 892 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.005009 s
15:46:23.369 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 3:46:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360
15:46:23.373 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.373 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
15:46:23.373 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
15:46:23.373 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:46:23.373 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:46:23.373 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 3:46:23 PM UTC
15:46:23.373 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.373 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.373 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:46:23.373 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:46:23.373 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:46:23.373 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:46:23.374 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
15:46:23.374 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
15:46:23.374 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
15:46:23.374 INFO CollectMultipleMetricsSpark - Requester pays: disabled
15:46:23.374 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
15:46:23.374 INFO CollectMultipleMetricsSpark - Initializing engine
15:46:23.374 INFO CollectMultipleMetricsSpark - Done initializing engine
15:46:23.374 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
15:46:23.375 INFO MemoryStore - Block broadcast_3413 stored as values in memory (estimated size 306.3 KiB, free 1916.3 MiB)
15:46:23.382 INFO MemoryStore - Block broadcast_3413_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1916.2 MiB)
15:46:23.382 INFO BlockManagerInfo - Added broadcast_3413_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1919.1 MiB)
15:46:23.382 INFO SparkContext - Created broadcast 3413 from newAPIHadoopFile at PathSplitSource.java:96
15:46:23.401 INFO MemoryStore - Block broadcast_3414 stored as values in memory (estimated size 306.3 KiB, free 1915.9 MiB)
15:46:23.408 INFO MemoryStore - Block broadcast_3414_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1915.9 MiB)
15:46:23.408 INFO BlockManagerInfo - Added broadcast_3414_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1919.1 MiB)
15:46:23.408 INFO SparkContext - Created broadcast 3414 from newAPIHadoopFile at PathSplitSource.java:96
15:46:23.427 INFO FileInputFormat - Total input files to process : 1
15:46:23.430 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
15:46:23.430 INFO DAGScheduler - Got job 893 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
15:46:23.430 INFO DAGScheduler - Final stage: ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
15:46:23.431 INFO DAGScheduler - Parents of final stage: List()
15:46:23.431 INFO DAGScheduler - Missing parents: List()
15:46:23.431 INFO DAGScheduler - Submitting ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
15:46:23.447 INFO MemoryStore - Block broadcast_3415 stored as values in memory (estimated size 478.0 KiB, free 1915.4 MiB)
15:46:23.449 INFO MemoryStore - Block broadcast_3415_piece0 stored as bytes in memory (estimated size 208.0 KiB, free 1915.2 MiB)
15:46:23.449 INFO BlockManagerInfo - Added broadcast_3415_piece0 in memory on localhost:43633 (size: 208.0 KiB, free: 1918.9 MiB)
15:46:23.450 INFO SparkContext - Created broadcast 3415 from broadcast at DAGScheduler.scala:1580
15:46:23.450 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
15:46:23.450 INFO TaskSchedulerImpl - Adding task set 2486.0 with 1 tasks resource profile 0
15:46:23.450 INFO TaskSetManager - Starting task 0.0 in stage 2486.0 (TID 1917) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
15:46:23.450 INFO Executor - Running task 0.0 in stage 2486.0 (TID 1917)
15:46:23.479 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.bam:0+8071
15:46:23.482 INFO Executor - Finished task 0.0 in stage 2486.0 (TID 1917). 989 bytes result sent to driver
15:46:23.482 INFO TaskSetManager - Finished task 0.0 in stage 2486.0 (TID 1917) in 32 ms on localhost (executor driver) (1/1)
15:46:23.482 INFO TaskSchedulerImpl - Removed TaskSet 2486.0, whose tasks have all completed, from pool
15:46:23.483 INFO DAGScheduler - ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.052 s
15:46:23.483 INFO DAGScheduler - Job 893 is finished. Cancelling potential speculative or zombie tasks for this job
15:46:23.483 INFO TaskSchedulerImpl - Killing all running tasks in stage 2486: Stage finished
15:46:23.483 INFO DAGScheduler - Job 893 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.052396 s
15:46:23.483 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 3:46:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360
15:46:23.487 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.487 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
15:46:23.487 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
15:46:23.487 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
15:46:23.487 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
15:46:23.487 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 3:46:23 PM UTC
15:46:23.487 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.487 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
15:46:23.487 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
15:46:23.487 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
15:46:23.487 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
15:46:23.487 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
15:46:23.487 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
15:46:23.487 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
15:46:23.487 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
15:46:23.487 INFO CollectMultipleMetricsSpark - Requester pays: disabled
15:46:23.487 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
15:46:23.487 INFO CollectMultipleMetricsSpark - Initializing engine
15:46:23.487 INFO CollectMultipleMetricsSpark - Done initializing engine
15:46:23.487 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
15:46:23.489 INFO MemoryStore - Block broadcast_3416 stored as values in memory (estimated size 600.0 B, free 1915.2 MiB)
15:46:23.490 INFO MemoryStore - Block broadcast_3416_piece0 stored as bytes in memory (estimated size 211.0 B, free 1915.2 MiB)
15:46:23.490 INFO BlockManagerInfo - Added broadcast_3416_piece0 in memory on localhost:43633 (size: 211.0 B, free: 1918.9 MiB)
15:46:23.490 INFO SparkContext - Created broadcast 3416 from broadcast at CramSource.java:114
15:46:23.491 INFO MemoryStore - Block broadcast_3417 stored as values in memory (estimated size 306.3 KiB, free 1914.9 MiB)
15:46:23.497 INFO MemoryStore - Block broadcast_3417_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1914.8 MiB)
15:46:23.497 INFO BlockManagerInfo - Added broadcast_3417_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1918.8 MiB)
15:46:23.497 INFO SparkContext - Created broadcast 3417 from newAPIHadoopFile at PathSplitSource.java:96
15:46:23.511 INFO MemoryStore - Block broadcast_3418 stored as values in memory (estimated size 600.0 B, free 1914.8 MiB)
15:46:23.512 INFO MemoryStore - Block broadcast_3418_piece0 stored as bytes in memory (estimated size 211.0 B, free 1914.8 MiB)
15:46:23.512 INFO BlockManagerInfo - Added broadcast_3418_piece0 in memory on localhost:43633 (size: 211.0 B, free: 1918.8 MiB)
15:46:23.512 INFO SparkContext - Created broadcast 3418 from broadcast at CramSource.java:114
15:46:23.512 INFO MemoryStore - Block broadcast_3419 stored as values in memory (estimated size 306.3 KiB, free 1914.5 MiB)
15:46:23.519 INFO MemoryStore - Block broadcast_3419_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1914.5 MiB)
15:46:23.519 INFO BlockManagerInfo - Added broadcast_3419_piece0 in memory on localhost:43633 (size: 64.4 KiB, free: 1918.7 MiB)
15:46:23.519 INFO SparkContext - Created broadcast 3419 from newAPIHadoopFile at PathSplitSource.java:96
15:46:23.533 INFO FileInputFormat - Total input files to process : 1
15:46:23.536 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
15:46:23.536 INFO DAGScheduler - Got job 894 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
15:46:23.536 INFO DAGScheduler - Final stage: ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
15:46:23.536 INFO DAGScheduler - Parents of final stage: List()
15:46:23.536 INFO DAGScheduler - Missing parents: List()
15:46:23.536 INFO DAGScheduler - Submitting ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
15:46:23.547 INFO MemoryStore - Block broadcast_3420 stored as values in memory (estimated size 330.5 KiB, free 1914.1 MiB)
15:46:23.549 INFO MemoryStore - Block broadcast_3420_piece0 stored as bytes in memory (estimated size 143.8 KiB, free 1914.0 MiB)
15:46:23.549 INFO BlockManagerInfo - Added broadcast_3420_piece0 in memory on localhost:43633 (size: 143.8 KiB, free: 1918.6 MiB)
15:46:23.549 INFO SparkContext - Created broadcast 3420 from broadcast at DAGScheduler.scala:1580
15:46:23.549 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
15:46:23.549 INFO TaskSchedulerImpl - Adding task set 2487.0 with 1 tasks resource profile 0
15:46:23.549 INFO TaskSetManager - Starting task 0.0 in stage 2487.0 (TID 1918) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9773 bytes)
15:46:23.550 INFO Executor - Running task 0.0 in stage 2487.0 (TID 1918)
15:46:23.571 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.cram:0+8617
15:46:23.575 INFO Executor - Finished task 0.0 in stage 2487.0 (TID 1918). 989 bytes result sent to driver
15:46:23.575 INFO TaskSetManager - Finished task 0.0 in stage 2487.0 (TID 1918) in 26 ms on localhost (executor driver) (1/1)
15:46:23.575 INFO TaskSchedulerImpl - Removed TaskSet 2487.0, whose tasks have all completed, from pool
15:46:23.575 INFO DAGScheduler - ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.039 s
15:46:23.575 INFO DAGScheduler - Job 894 is finished. Cancelling potential speculative or zombie tasks for this job
15:46:23.575 INFO TaskSchedulerImpl - Killing all running tasks in stage 2487: Stage finished
15:46:23.575 INFO DAGScheduler - Job 894 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.039362 s
15:46:23.575 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 3:46:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1426063360