Class org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContaminationIntegrationTest
Tests
| Test |
Duration |
Result |
| testArtificialData[0](true) |
0.450s |
passed |
| testArtificialData[1](false) |
0.314s |
passed |
| testMatchedNormal |
1.911s |
passed |
| testSmallGenePanelErrorBars[0](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups1.tsv) |
0.073s |
passed |
| testSmallGenePanelErrorBars[1](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups2.tsv) |
0.073s |
passed |
| testSmallGenePanelErrorBars[2](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups3.tsv) |
0.071s |
passed |
| testSmallGenePanelWithNoHomAlts |
0.070s |
passed |
| testSpikeIn[0](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.01_NA12892_0.99.table, 0.01, 0.001) |
1.238s |
passed |
| testSpikeIn[1](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.03_NA12892_0.97.table, 0.03, 0.001) |
1.157s |
passed |
| testSpikeIn[2](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.05_NA12892_0.95.table, 0.05, 0.001) |
1.051s |
passed |
| testSpikeIn[3](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.08_NA12892_0.92.table, 0.08, 0.001) |
1.145s |
passed |
Standard error
[May 27, 2025 at 3:50:21 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:21 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:50:28 PM UTC] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120