Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.279s |
passed |
| testOnRealBam[0](1) |
17.747s |
passed |
| testOnRealBam[1](5) |
18.200s |
passed |
| testTwoSamples |
0.276s |
passed |
Standard error
[May 27, 2025 at 3:52:34 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:34 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:37 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:52:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:53:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.27 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:53:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:53:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120
[May 27, 2025 at 3:53:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1698693120