Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.966s |
passed |
| testSplitsFixNDN |
0.075s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.592s |
passed |
| testSplitsTargetRegionFunctionality |
0.193s |
passed |
| testSplitsWithOverhangs |
0.396s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.345s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.365s |
passed |
| testSplitsWithOverhangsNotClipping |
0.344s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.317s |
passed |
Standard output
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[15:53:44] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[15:53:44] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[15:53:46] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[15:53:46] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[15:53:47] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[15:53:47] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[15:53:47] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
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[15:53:48] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 3:53:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 3:53:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=677380096
[May 27, 2025 at 3:53:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=677380096