Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.850s |
passed |
| testApplySNPRecalibration |
1.797s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.086s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.119s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.080s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.067s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.069s |
passed |
Standard output
--------------------------------------------------------------------------------
[15:56:05] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
--------------------------------------------------------------------------------
[15:56:06] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
--------------------------------------------------------------------------------
[15:56:08] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[15:56:08] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[15:56:08] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[15:56:08] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 27, 2025 at 3:56:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1606418432
[May 27, 2025 at 3:56:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1606418432