Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
16

tests
0

failures
1

ignored
0.314s

duration
100%

successful

Tests

Test Duration Result
testDuplicateSources 0.018s passed
testGetCompatibleHeader 0.026s passed
testGetConflictingHeader 0.027s passed
testIteratorOverlapping 0.029s passed
testNoDictionaryForAllInputs 0.025s passed
testNoDictionaryForOneInput 0.020s passed
testNoDictionaryForOnlyInput 0.017s passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26) 0.018s passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13) 0.018s passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26) 0.021s passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26) 0.020s passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14) 0.019s passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7) 0.017s passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14) 0.020s passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3) 0.019s passed
testVariantsFromBundleOrder - ignored

Standard error

16:36:18.358 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.358 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.358 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.358 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.358 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.359 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.359 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.359 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.359 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.359 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.359 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.359 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.359 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.359 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.359 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.359 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.359 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.361 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:36:18.362 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.376 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.376 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.376 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.376 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.376 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.376 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.376 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.376 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.377 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.377 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.377 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.377 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.377 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.377 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.378 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.380 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:36:18.385 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.385 INFO  ProgressMeter - Starting traversal
16:36:18.385 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.388 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
16:36:18.389 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:36:18.389 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.410 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.410 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.410 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.410 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.410 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.410 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.410 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.411 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.411 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.411 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.411 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.411 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.411 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.411 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.411 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.411 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.411 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.412 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:36:18.416 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
16:36:18.417 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.437 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:36:18.437 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.437 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.437 INFO  TestMultiVariantWalkerIterator - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.438 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:36:18.438 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:36:18.438 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.438 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.438 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.438 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
16:36:18.438 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
16:36:18.438 INFO  TestMultiVariantWalkerIterator - Initializing engine
16:36:18.440 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
16:36:18.442 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
16:36:18.444 INFO  TestMultiVariantWalkerIterator - Done initializing engine
16:36:18.444 INFO  ProgressMeter - Starting traversal
16:36:18.444 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.445 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
16:36:18.445 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
16:36:18.445 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.466 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.466 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.466 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.466 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.466 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.466 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.466 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.466 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.466 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.467 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.467 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.467 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.467 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.467 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.468 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
16:36:18.469 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
16:36:18.471 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
16:36:18.471 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
16:36:18.471 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.486 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.486 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.486 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.486 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.486 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.486 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.486 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.486 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.486 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.486 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.486 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.486 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.486 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.486 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.487 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.487 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.487 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.488 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.489 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
16:36:18.490 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
16:36:18.490 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.490 INFO  ProgressMeter - Starting traversal
16:36:18.490 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.491 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:36:18.491 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:36:18.491 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.506 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.506 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.506 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.506 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.506 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.506 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.506 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.506 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.506 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.506 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.506 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.506 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.506 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.506 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.506 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.506 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.507 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.507 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
16:36:18.508 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
16:36:18.508 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.508 INFO  ProgressMeter - Starting traversal
16:36:18.508 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.509 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
16:36:18.509 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
16:36:18.509 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.523 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.523 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.524 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.524 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.524 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.524 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.524 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.524 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.524 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.524 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.524 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.524 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.524 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.524 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.524 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.524 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.524 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.525 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:36:18.526 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.526 INFO  ProgressMeter - Starting traversal
16:36:18.526 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.527 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:36:18.527 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:36:18.528 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.542 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.542 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.542 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.542 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.542 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.542 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.542 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.542 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.542 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.542 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.542 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.542 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.542 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.542 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.543 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.543 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.543 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.544 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.545 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.545 INFO  ProgressMeter - Starting traversal
16:36:18.545 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.546 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
16:36:18.546 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
16:36:18.546 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.560 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.561 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.561 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.561 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.561 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.561 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.561 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.561 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.561 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.561 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.561 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.561 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.561 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.561 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.561 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.561 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.561 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.562 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.563 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:36:18.565 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.565 INFO  ProgressMeter - Starting traversal
16:36:18.565 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.566 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:36:18.566 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:36:18.566 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.580 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.581 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.581 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.581 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.581 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.581 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.581 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.581 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.581 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.581 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.581 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.581 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.581 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.581 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.581 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.581 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.581 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.583 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
16:36:18.584 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
16:36:18.586 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.586 INFO  ProgressMeter - Starting traversal
16:36:18.586 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.587 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:36:18.587 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:36:18.587 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.601 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.601 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.601 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.601 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.601 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.602 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.602 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.602 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.602 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.602 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.602 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.602 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.602 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.602 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.602 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.602 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.602 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.603 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:36:18.604 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:36:18.605 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.605 INFO  ProgressMeter - Starting traversal
16:36:18.605 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.606 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
16:36:18.606 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
16:36:18.606 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.620 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.620 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.620 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.620 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.620 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.620 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.620 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.620 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.620 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.620 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.620 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.620 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.620 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.620 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.620 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.620 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.620 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.621 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.622 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:36:18.623 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.623 INFO  ProgressMeter - Starting traversal
16:36:18.623 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.623 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
16:36:18.623 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
16:36:18.623 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.637 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.637 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.637 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.637 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.637 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.637 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.637 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.638 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.638 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.638 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.638 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.638 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.638 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.638 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.638 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.638 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.638 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.639 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.641 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:36:18.642 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:36:18.643 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.643 INFO  ProgressMeter - Starting traversal
16:36:18.643 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.643 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
16:36:18.644 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
16:36:18.644 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264
16:36:18.658 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.658 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g113e5d7-SNAPSHOT
16:36:18.658 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:18.658 INFO  TestMultiVariantWalker - Executing as root@1c4c36ffc4f6 on Linux v6.11.0-1014-azure amd64
16:36:18.658 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
16:36:18.658 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:36:18 PM GMT
16:36:18.658 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.658 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:36:18.658 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:18.658 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:18.658 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:18.658 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:18.659 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:36:18.659 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:36:18.659 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:36:18.659 INFO  TestMultiVariantWalker - Requester pays: disabled
16:36:18.659 INFO  TestMultiVariantWalker - Initializing engine
16:36:18.660 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:36:18.661 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:36:18.662 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
16:36:18.662 INFO  TestMultiVariantWalker - Done initializing engine
16:36:18.662 INFO  ProgressMeter - Starting traversal
16:36:18.662 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:36:18.663 INFO  ProgressMeter -             unmapped              0.0                     3         180000.0
16:36:18.663 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
16:36:18.663 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:36:18 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1797259264