Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.091s |
passed |
| testBedGZIndex |
0.081s |
passed |
| testBedIndex |
0.086s |
passed |
| testCompressedBCF2_2Index |
0.081s |
passed |
| testEnsemblGtfIndex |
0.295s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@487d0a60, [Ljava.lang.String;@ab116aa, [Ljava.lang.String;@1e1df33a) |
0.005s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@5d659e6a, [Ljava.lang.String;@404289da, [Ljava.lang.String;@6da648c5) |
0.002s |
passed |
| testGVCFIndex |
0.134s |
passed |
| testGVCFTreatedAsVCFIndex |
0.088s |
passed |
| testIndexBCFFileGZ |
0.080s |
passed |
| testIndexNonFeatureFileGZ |
0.079s |
passed |
| testNewGencodeLiftoverGtfFile |
0.099s |
passed |
| testSAMPileupGZIndex |
0.099s |
passed |
| testUncompressedBCF2_2Index |
0.092s |
passed |
| testVCFGZIPIndex |
0.094s |
passed |
| testVCFGZIPIndex_inferredName |
0.084s |
passed |
| testVCFGZIndex_inferredName |
0.084s |
passed |
| testVCFGZIndex_tabix |
0.083s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.083s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.107s |
passed |
| testVCFIndex |
0.090s |
passed |
| testVCFIndex_cannotWrite |
0.087s |
passed |
| testVCFIndex_inferredName |
0.078s |
passed |
| testVCFIndex_missingFile |
0.080s |
passed |
| testVCFWithNoRecords |
0.077s |
passed |
Standard error
[May 27, 2025 at 4:39:17 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:17 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:17 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:17 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:18 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:39:19 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000