Class org.broadinstitute.hellbender.tools.copynumber.ModelSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.copynumber > ModelSegmentsIntegrationTest
33

tests
0

failures
0

ignored
44.354s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testInvalidDataModesMultipleSamples[0]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.273s passed
testInvalidDataModesMultipleSamples[10]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.096s passed
testInvalidDataModesMultipleSamples[11]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.082s passed
testInvalidDataModesMultipleSamples[12]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.117s passed
testInvalidDataModesMultipleSamples[13]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.077s passed
testInvalidDataModesMultipleSamples[14]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.073s passed
testInvalidDataModesMultipleSamples[1]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.203s passed
testInvalidDataModesMultipleSamples[2]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 0.090s passed
testInvalidDataModesMultipleSamples[3]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.293s passed
testInvalidDataModesMultipleSamples[4]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.219s passed
testInvalidDataModesMultipleSamples[5](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.202s passed
testInvalidDataModesMultipleSamples[6]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.278s passed
testInvalidDataModesMultipleSamples[7](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.292s passed
testInvalidDataModesMultipleSamples[8]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.214s passed
testInvalidDataModesMultipleSamples[9]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.219s passed
testInvalidDataModesSingleSample[0](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.231s passed
testInvalidDataModesSingleSample[1](null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.201s passed
testInvalidDataModesSingleSample[2](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.148s passed
testInvalidDataModesSingleSample[3](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 0.137s passed
testInvalidDataModesSingleSample[4](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.074s passed
testInvalidDataModesSingleSample[5](null, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.079s passed
testMetadata 0.309s passed
testValidDataModesMultipleSamples[0](multiple-sample-cr-ac-nac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 5.612s passed
testValidDataModesMultipleSamples[1](multiple-sample-cr-ac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.454s passed
testValidDataModesMultipleSamples[2](multiple-sample-ac-nac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.606s passed
testValidDataModesMultipleSamples[3](multiple-sample-cr, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 1.366s passed
testValidDataModesMultipleSamples[4](multiple-sample-ac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.319s passed
testValidDataModesSingleSample[0](single-sample-cr-ac-nac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.227s passed
testValidDataModesSingleSample[1](single-sample-cr-ac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.335s passed
testValidDataModesSingleSample[2](single-sample-ac-nac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 3.785s passed
testValidDataModesSingleSample[3](single-sample-cr, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, null) 1.080s passed
testValidDataModesSingleSample[4](single-sample-ac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.663s passed

Standard error

[May 27, 2025 at 4:40:10 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:10 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=545259520
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:12 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:13 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:14 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:14 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:15 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:20 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:20 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:25 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:25 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:30 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:30 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:31 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:31 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:36 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:40 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:45 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:49 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:50 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=933232640
[May 27, 2025 at 4:40:54 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=933232640