Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
5.712s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 1.116s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.778s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.790s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.665s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.605s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.634s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.452s passed
testPRFailWithLowMaxCycle 0.176s passed
testPRNoFailWithHighMaxCycle 0.496s passed

Standard output

--------------------------------------------------------------------------------
[16:46:53] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[16:46:53] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[May 27, 2025 at 4:46:49 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:50 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:51 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:51 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:52 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:53 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:53 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:53 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2199912448
[May 27, 2025 at 4:46:54 PM GMT] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2199912448