Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.552s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.263s passed
testCountVariantsWithIntervals[10](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.249s passed
testCountVariantsWithIntervals[11](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.242s passed
testCountVariantsWithIntervals[1](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.255s passed
testCountVariantsWithIntervals[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.246s passed
testCountVariantsWithIntervals[3](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.236s passed
testCountVariantsWithIntervals[4](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.251s passed
testCountVariantsWithIntervals[5](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.241s passed
testCountVariantsWithIntervals[6](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.241s passed
testCountVariantsWithIntervals[7](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.256s passed
testCountVariantsWithIntervals[8](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.244s passed
testCountVariantsWithIntervals[9](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.243s passed
testNoNPRWhenOutputIsUnspecified 0.095s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.101s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.099s passed
test[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.290s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 27, 2025 at 4:49:37 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:37 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:39 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:40 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:40 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:40 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:40 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:41 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:41 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:41 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:41 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:42 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424
[May 27, 2025 at 4:49:43 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1702887424