Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.283s |
passed |
| testASEReadCounterImproperPairs |
3.158s |
passed |
| testASEReadCounterMinDepth70 |
0.212s |
passed |
| testASEReadCounterMultipleContexts |
0.142s |
passed |
| testASEReadCounterNonRefAllele |
0.141s |
passed |
| testASEReadCounterWarnings |
0.216s |
passed |
| testASEReadCounterWithCountOverlaps |
0.204s |
passed |
| testASEReadCounterWithCountReads |
0.202s |
passed |
| testASEReadCounterWithHighMQ |
0.201s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.217s |
passed |
| testASEReadCounterWithLowMQ |
0.204s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.206s |
passed |
Standard output
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[16:58:11] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[16:58:11] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[16:58:14] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:16] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:58:16] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 4:58:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:14 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:15 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280
[May 27, 2025 at 4:58:16 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2128609280