Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.344s |
passed |
| testSplitsFixNDN |
0.102s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.525s |
passed |
| testSplitsTargetRegionFunctionality |
0.246s |
passed |
| testSplitsWithOverhangs |
0.413s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.379s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.340s |
passed |
| testSplitsWithOverhangsNotClipping |
0.282s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.363s |
passed |
Standard output
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[16:58:39] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[16:58:39] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:58:41] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:58:41] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[16:58:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[16:58:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[16:58:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[16:58:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 4:58:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:39 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:41 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:58:42 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=761266176
[May 27, 2025 at 4:58:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=761266176
[May 27, 2025 at 4:58:43 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=761266176