Class org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > SelectVariantsIntegrationTest
88

tests
0

failures
0

ignored
7.893s

duration
100%

successful

Tests

Test Duration Result
testAlleleTrimming 0.088s passed
testCombineInfoAndGenotypeJexl 0.088s passed
testComplexSelection 0.088s passed
testComplexSelectionWithNonExistingSamples 0.085s passed
testConcordance 0.089s passed
testDiscordance 0.086s passed
testDropAnnotations[0](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894, testSelectVariants_DropAnnotations.vcf, standard) 0.087s passed
testDropAnnotations[1](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -DA NotAnAnnotation -DGA AlsoNotAnAnnotation, testSelectVariants_DropAnnotations.vcf, unused_annotations) 0.086s passed
testDropAnnotations[2](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'FisherStrand > 10.0', testSelectVariants_DropAnnotationsSelectFisherStrand.vcf, select_on_dropped_annotation) 0.090s passed
testDropAnnotations[3](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'RMSMAPQ > 175.0', testSelectVariants_DropAnnotationsSelectRMSMAPQ.vcf, select_on_kept_annotation) 0.093s passed
testDropAnnotations[4](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getExtendedAttribute("RD")>6', testSelectVariants_DropAnnotationsSelectRD.vcf, select_on_dropped_genotype_annotation) 0.091s passed
testDropAnnotations[5](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getGQ()==1', testSelectVariants_DropAnnotationsSelectGQ.vcf, select_on_kept_genotype_annotation) 0.085s passed
testEmptyVcfException 0.082s passed
testExcludeSelectionIDFromFile 0.087s passed
testExcludeSelectionIDLiteral 0.088s passed
testExcludeSelectionType 0.085s passed
testExpressionSelection 0.087s passed
testFORMATFieldGivenToSelect 0.086s passed
testFileWithoutInfoLineInHeader 0.085s passed
testFileWithoutInfoLineInHeaderWithOverride 0.086s passed
testHaploid 0.088s passed
testINFOFieldGivenToSelectGenotype 0.086s passed
testInvalidJexl 0.088s passed
testInvertJexlSelection 0.089s passed
testInvertMendelianViolationSelection 0.090s passed
testInvertSelection 0.087s passed
testJEXLFilterFirst 0.177s passed
testJexlDirectlyAccessGenotype 0.088s passed
testJexlGenotypeFilter 0.086s passed
testKeepOriginalAC 0.086s passed
testKeepOriginalACAndENV 0.084s passed
testKeepOriginalDP 0.094s passed
testKeepSelectionIDFromFile 0.087s passed
testKeepSelectionIDLiteral 0.085s passed
testLogicalAndOrInJexl 0.086s passed
testManyAllelicWithoutPLsDoesntFreeze 0.096s passed
testMaxFilteredGenotypesSelection 0.085s passed
testMaxFractionFilteredGenotypesSelection 0.091s passed
testMaxIndelLengthSelection 0.090s passed
testMaxNoCall0_25 0.085s passed
testMaxNoCall0_5 0.084s passed
testMaxNoCall1 0.082s passed
testMaxNoCall2 0.089s passed
testMendelianViolationSelection 0.088s passed
testMinFilteredGenotypesSelection 0.085s passed
testMinFractionFilteredGenotypesSelection 0.084s passed
testMinIndelLengthSelection 0.088s passed
testMissingVcfException 0.081s passed
testMultiAllelicAnnotationOrdering 0.089s passed
testMultipleINFOJexls 0.089s passed
testMultipleRecordsAtOnePosition 0.084s passed
testNoGTs 0.091s passed
testNonExistentSampleFile 0.080s passed
testNonExistingFieldSelection 0.088s passed
testNotFileVcfException 0.082s passed
testOutputOnlyStartingInInterval 0.087s passed
testRemoveMLE 0.090s passed
testRemoveSingleSpanDelAllele 0.086s passed
testRemoveSingleSpanDelAlleleExNonVar 0.089s passed
testRemoveSingleSpanDelAlleleNoSpanDel 0.088s passed
testRepeatedLineSelectionAndExludeFiltered 0.092s passed
testResortingFileWarning 0.089s passed
testSACDiploid 0.092s passed
testSACNonDiploid 0.091s passed
testSACSimpleDiploid 0.093s passed
testSampleExclusionFromFileAndSeparateSample 0.087s passed
testSampleExclusionJustFromExpression 0.087s passed
testSampleExclusionJustFromFile 0.088s passed
testSampleExclusionJustFromNegationExpression 0.088s passed
testSampleInclusionWithNonexistingSamples 0.084s passed
testSampleSelection 0.088s passed
testSelectFromMultiAllelic 0.101s passed
testSelectRandomFraction 0.096s passed
testSetFilteredGtoNocall 0.093s passed
testSetFilteredGtoNocallUpdateInfo 0.089s passed
testTetraDiploid 0.099s passed
testTetraploid 0.089s passed
testUntrimmedVariants 0.085s passed
testUntrimmedVariantsWithSetFilteredGtToNocall 0.083s passed
testUnusedAlleleTrimming[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeftTrim.vcf) 0.083s passed
testUnusedAlleleTrimming[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeft.vcf) 0.087s passed
testUnusedAlleleTrimming[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCT.vcf) 0.086s passed
testUnusedAlleleTrimming[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTEnv.vcf) 0.085s passed
testUnusedAlleleTrimming[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrim.vcf) 0.087s passed
testUnusedAlleleTrimming[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrimAltEnv.vcf) 0.088s passed
testUseCorrectDPInJexl 0.175s passed
testVariantTypeSelection 0.089s passed
testVariantTypeSelectionForGVCF 0.085s passed

Standard output

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[17:00:34] Executing test SelectVariantsIntegrationTest:testAlleleTrimming
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[17:00:35] Executing test SelectVariantsIntegrationTest:testComplexSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:35] Executing test SelectVariantsIntegrationTest:testComplexSelectionWithNonExistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:35] Executing test SelectVariantsIntegrationTest:testConcordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDiscordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--standard
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--unused_annotations
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_annotation
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_annotation
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_genotype_annotation
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[17:00:35] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_genotype_annotation
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[17:00:35] Executing test SelectVariantsIntegrationTest:testEmptyVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/reallyEmpty.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:testExcludeSelectionType--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:testSimpleExpressionSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteringDepthInFormat.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeader
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[17:00:36] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeaderWithOverride
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[17:00:36] Executing test SelectVariantsIntegrationTest:testHaploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/haploid-multisample.vcf
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[17:00:36] Executing test SelectVariantsIntegrationTest:InvalidJexl
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[17:00:36] Executing test SelectVariantsIntegrationTest:testInvertJexlSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testInvertMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testInvertSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testKeepOriginalAC--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testKeepOriginalACAndENV--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testKeepOriginalDP--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:37] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_25--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_5--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxNoCall1--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMaxNoCall2--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMinFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:00:38] Executing test SelectVariantsIntegrationTest:testMinFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testMinIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testMissingVcfException--test.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:test multi allelic annotation ordering --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testMultipleRecordsAtOnePosition--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariants.onePosition.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testNoGTs--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcf4.1.example.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testNonExistentSampleFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testNonExistingSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:testNotFileVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/
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[17:00:39] Executing test SelectVariantsIntegrationTest:test that variant interval output filter mode is applied
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[17:00:39] Executing test SelectVariantsIntegrationTest:testRemoveMLE--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.withMLE.vcf
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[17:00:39] Executing test SelectVariantsIntegrationTest:test removes variant line where '*' is only ALT allele --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:test will not remove variant line where '*' is only ALT allele because --exclude-non-variants not called --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:test encounter no instance of '*' as only ALT allele and ensure line is removed when only monomorphic allele existssrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testRepeatedLineSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/test.dup.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSACDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/diploid-multisample-sac.g.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSACNonDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample-sac.g.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSACSimpleDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/261_S01_raw_variants_gvcf.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSampleExclusionFromFileAndSeparateSample--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:40] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromRegexExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testSampleInclusionWithNonexistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testSampleSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:test select from multi allelic with exclude-non-variants --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic.bi-allelicInGIH.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocall--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocallUpdateInfo--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariantsInfoField.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testTetraDiploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetra-diploid.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testTetraploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample.vcf
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[17:00:41] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,--remove-unused-alternates)
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[17:00:42] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,(none))
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[17:00:42] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT)
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[17:00:42] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants)
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[17:00:42] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates)
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[17:00:42] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates)
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[17:00:42] Executing test SelectVariantsIntegrationTest:testVariantTypeSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:00:42] Executing test SelectVariantsIntegrationTest:testVariantTypeSelectionForGVCF--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/gvcfExample.g.vcf

Standard error

[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:35 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:36 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1048576000
[May 27, 2025 at 5:00:37 PM GMT] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000
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Runtime.totalMemory()=1048576000