Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
5.864s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.009s	passed
testGetCompatibleHeader	0.016s	passed
testGetConflictingHeader	0.009s	passed
testIteratorOverlapping	0.014s	passed
testNoDictionaryForAllInputs	0.014s	passed
testNoDictionaryForOneInput	0.011s	passed
testNoDictionaryForOnlyInput	0.009s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.009s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.008s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.010s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.011s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.010s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.008s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.010s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.009s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4b12a8ef-6f60-4a22-8ff8-1c2b4ea3bdbadir/remote_bundle.json, 1, 14)	3.158s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testba285316-a27c-4c4a-892b-e98ee6ac50f3dir/remote_bundle.json, 2:200-600, 3)	2.549s	passed
Standard error

16:22:45.114 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.114 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.114 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.114 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.114 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.115 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.115 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.115 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.115 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.115 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.115 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.115 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.115 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.115 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.115 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.115 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.115 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.117 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:22:45.118 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.122 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.122 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.122 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.123 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.123 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.123 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.123 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.123 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.123 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.123 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.124 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.124 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.124 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.124 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.124 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.124 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.124 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.125 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.127 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:22:45.131 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.131 INFO  ProgressMeter - Starting traversal
16:22:45.131 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.134 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
16:22:45.134 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:22:45.134 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.139 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.139 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.140 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.140 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.140 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.140 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.140 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.140 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.140 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.140 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.140 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.140 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.141 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.141 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:22:45.143 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
16:22:45.144 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.149 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:22:45.149 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.149 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.149 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.149 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.149 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.150 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:22:45.150 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
16:22:45.150 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.150 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.150 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.150 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.150 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
16:22:45.150 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
16:22:45.150 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
16:22:45.150 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
16:22:45.150 INFO  TestMultiVariantWalkerIterator - Initializing engine
16:22:45.152 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
16:22:45.154 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
16:22:45.156 INFO  TestMultiVariantWalkerIterator - Done initializing engine
16:22:45.156 INFO  ProgressMeter - Starting traversal
16:22:45.156 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.157 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
16:22:45.157 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
16:22:45.158 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.165 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.165 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.165 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.165 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.165 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.165 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.165 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.165 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.166 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.166 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.166 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.166 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.166 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.166 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.166 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.166 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.166 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.168 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
16:22:45.169 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
16:22:45.170 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
16:22:45.170 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
16:22:45.171 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.177 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.177 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.177 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.177 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.177 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.177 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.177 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.177 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.177 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.177 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.177 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.177 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.178 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.178 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.178 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.178 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.178 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.178 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.179 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
16:22:45.180 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
16:22:45.181 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.181 INFO  ProgressMeter - Starting traversal
16:22:45.181 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.182 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:22:45.183 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:22:45.183 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.188 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.188 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.188 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.188 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.189 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.189 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.189 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.189 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.189 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.189 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.189 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.189 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.189 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.189 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.189 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.189 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.189 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.190 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
16:22:45.191 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
16:22:45.191 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.191 INFO  ProgressMeter - Starting traversal
16:22:45.191 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.191 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
16:22:45.191 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
16:22:45.191 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.197 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.197 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.197 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.197 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.197 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.197 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.197 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.197 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.197 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.197 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.197 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.197 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.198 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.198 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.198 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.198 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.198 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.198 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:22:45.199 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.199 INFO  ProgressMeter - Starting traversal
16:22:45.199 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.200 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:22:45.200 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:22:45.200 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.205 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.205 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.205 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.205 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.205 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.205 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.206 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.206 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.206 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.206 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.206 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.206 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.206 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.206 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.206 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.206 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.206 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.207 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.208 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.208 INFO  ProgressMeter - Starting traversal
16:22:45.208 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.209 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
16:22:45.209 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
16:22:45.209 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.214 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.214 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.214 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.214 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.214 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.214 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.214 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.214 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.214 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.214 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.214 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.214 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.214 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.214 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.214 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.214 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.214 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.215 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.216 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:22:45.218 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.218 INFO  ProgressMeter - Starting traversal
16:22:45.218 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.219 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:22:45.219 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:22:45.219 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.224 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.224 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.224 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.225 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.225 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.225 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.225 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.225 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.225 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.225 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.225 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.225 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.225 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.225 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.225 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.225 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.225 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.226 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
16:22:45.228 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
16:22:45.229 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.229 INFO  ProgressMeter - Starting traversal
16:22:45.230 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.231 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
16:22:45.231 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
16:22:45.231 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.237 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.237 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.237 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.237 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.237 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.237 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.237 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.237 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.237 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.237 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.237 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.237 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.237 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.237 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.237 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.238 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.238 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.239 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
16:22:45.240 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:22:45.240 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.240 INFO  ProgressMeter - Starting traversal
16:22:45.240 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.241 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
16:22:45.241 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
16:22:45.241 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.246 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.246 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.246 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.246 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.246 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.246 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.246 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.246 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.246 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.246 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.246 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.246 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.246 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.246 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.246 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.246 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.246 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.247 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.248 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:22:45.248 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.248 INFO  ProgressMeter - Starting traversal
16:22:45.248 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.248 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
16:22:45.248 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
16:22:45.248 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.253 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.253 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.253 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.253 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.253 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.253 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.253 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.253 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.253 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.253 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.253 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.253 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.254 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.254 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.254 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.254 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.254 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.255 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.256 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:22:45.258 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:22:45.258 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.258 INFO  ProgressMeter - Starting traversal
16:22:45.258 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.259 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
16:22:45.259 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
16:22:45.259 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:45.263 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.263 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:45.263 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:45.263 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:45.263 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:45.263 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:45 PM UTC
16:22:45.263 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.263 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:45.264 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:45.264 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:45.264 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:45.264 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:45.264 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:45.264 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:45.264 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:45.264 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:45.264 INFO  TestMultiVariantWalker - Initializing engine
16:22:45.265 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
16:22:45.265 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
16:22:45.267 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
16:22:45.267 INFO  TestMultiVariantWalker - Done initializing engine
16:22:45.267 INFO  ProgressMeter - Starting traversal
16:22:45.267 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:45.268 INFO  ProgressMeter -             unmapped              0.0                     3         180000.0
16:22:45.268 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
16:22:45.268 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:45 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1604321280
16:22:48.281 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:48.281 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:48.281 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:48.281 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:48.281 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:48.281 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:48 PM UTC
16:22:48.281 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:48.281 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:48.282 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:48.282 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:48.282 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:48.282 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:48.282 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:48.282 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:48.282 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:48.282 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:48.282 INFO  TestMultiVariantWalker - Initializing engine
16:22:49.385 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4b12a8ef-6f60-4a22-8ff8-1c2b4ea3bdbadir/interleavedVariants_1.vcf
16:22:50.609 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test4b12a8ef-6f60-4a22-8ff8-1c2b4ea3bdbadir/interleavedVariants_2.vcf
16:22:51.308 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
16:22:51.308 INFO  TestMultiVariantWalker - Done initializing engine
16:22:51.308 INFO  ProgressMeter - Starting traversal
16:22:51.308 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:51.429 INFO  ProgressMeter -             unmapped              0.0                    14           6942.1
16:22:51.429 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
16:22:51.429 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:51 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1604321280
16:22:51.436 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:51.436 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
16:22:51.436 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
16:22:51.436 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:22:51.436 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:22:51.436 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 4:22:51 PM UTC
16:22:51.436 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:51.436 INFO  TestMultiVariantWalker - ------------------------------------------------------------
16:22:51.436 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:22:51.436 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:22:51.436 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:22:51.437 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:22:51.437 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
16:22:51.437 INFO  TestMultiVariantWalker - Inflater: IntelInflater
16:22:51.437 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
16:22:51.437 INFO  TestMultiVariantWalker - Requester pays: disabled
16:22:51.437 INFO  TestMultiVariantWalker - Initializing engine
16:22:52.149 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testba285316-a27c-4c4a-892b-e98ee6ac50f3dir/interleavedVariants_1.vcf
16:22:52.972 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_testba285316-a27c-4c4a-892b-e98ee6ac50f3dir/interleavedVariants_2.vcf
16:22:53.617 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
16:22:53.617 INFO  TestMultiVariantWalker - Done initializing engine
16:22:53.617 INFO  ProgressMeter - Starting traversal
16:22:53.617 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
16:22:53.979 INFO  ProgressMeter -             unmapped              0.0                     3            497.2
16:22:53.980 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
16:22:53.980 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 4:22:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1604321280