Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.078s |
passed |
| testMultiSampleBam |
0.085s |
passed |
| testUrlEncoding |
0.070s |
passed |
Standard error
16:25:47.483 INFO GetSampleName - ------------------------------------------------------------
16:25:47.483 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
16:25:47.483 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
16:25:47.483 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:25:47.483 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:25:47.484 INFO GetSampleName - Start Date/Time: May 27, 2025 at 4:25:47 PM UTC
16:25:47.484 INFO GetSampleName - ------------------------------------------------------------
16:25:47.484 INFO GetSampleName - ------------------------------------------------------------
16:25:47.484 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:25:47.484 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:25:47.484 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:25:47.484 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:25:47.484 INFO GetSampleName - Deflater: IntelDeflater
16:25:47.484 INFO GetSampleName - Inflater: IntelInflater
16:25:47.484 INFO GetSampleName - GCS max retries/reopens: 20
16:25:47.484 INFO GetSampleName - Requester pays: disabled
16:25:47.484 INFO GetSampleName - Initializing engine
16:25:47.485 INFO GetSampleName - Done initializing engine
16:25:47.486 INFO ProgressMeter - Starting traversal
16:25:47.486 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
16:25:47.486 INFO ProgressMeter - unmapped 0.0 0 NaN
16:25:47.486 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
16:25:47.486 INFO GetSampleName - Shutting down engine
[May 27, 2025 at 4:25:47 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:25:47 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
16:25:47.640 INFO GetSampleName - ------------------------------------------------------------
16:25:47.640 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
16:25:47.640 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
16:25:47.640 INFO GetSampleName - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:25:47.640 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:25:47.640 INFO GetSampleName - Start Date/Time: May 27, 2025 at 4:25:47 PM UTC
16:25:47.640 INFO GetSampleName - ------------------------------------------------------------
16:25:47.640 INFO GetSampleName - ------------------------------------------------------------
16:25:47.641 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:25:47.641 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:25:47.641 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:25:47.641 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:25:47.641 INFO GetSampleName - Deflater: IntelDeflater
16:25:47.641 INFO GetSampleName - Inflater: IntelInflater
16:25:47.641 INFO GetSampleName - GCS max retries/reopens: 20
16:25:47.641 INFO GetSampleName - Requester pays: disabled
16:25:47.641 INFO GetSampleName - Initializing engine
16:25:47.641 INFO GetSampleName - Done initializing engine
16:25:47.642 INFO ProgressMeter - Starting traversal
16:25:47.642 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
16:25:47.642 INFO ProgressMeter - unmapped 0.0 0 NaN
16:25:47.642 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
16:25:47.642 INFO GetSampleName - Shutting down engine
[May 27, 2025 at 4:25:47 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000