Class org.broadinstitute.hellbender.tools.spark.PileupSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testFeaturesPileupHdfs[0](false) |
1.818s |
passed |
| testFeaturesPileupHdfs[1](true) |
1.993s |
passed |
| testFeaturesPileup[0](false) |
0.895s |
passed |
| testFeaturesPileup[1](true) |
0.548s |
passed |
| testInsertLengthPileup[0](false) |
0.488s |
passed |
| testInsertLengthPileup[1](true) |
0.351s |
passed |
| testSimplePileup[0](false) |
0.463s |
passed |
| testSimplePileup[1](true) |
0.370s |
passed |
| testVerbosePileup[0](false) |
0.423s |
passed |
| testVerbosePileup[1](true) |
0.336s |
passed |
Standard error
[May 27, 2025 at 4:34:15 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1000341504
[May 27, 2025 at 4:34:16 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1000341504
[May 27, 2025 at 4:34:18 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1000341504
16:34:18.013 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 4:34:20 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
16:34:20.008 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 4:34:20 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:20 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:21 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:21 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:22 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:22 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464