Class org.broadinstitute.hellbender.tools.spark.RevertSamSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > RevertSamSparkIntegrationTest
27

tests
0

failures
0

ignored
9.850s

duration
100%

successful

Tests

Test Duration Result
basicPositiveTests[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, false, false, true, true, null, null, []) 0.422s passed
basicPositiveTests[10](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.230s passed
basicPositiveTests[11](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, true, false, false, null, null, []) 0.244s passed
basicPositiveTests[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.174s passed
basicPositiveTests[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.170s passed
basicPositiveTests[3](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, true, false, false, null, null, []) 0.196s passed
basicPositiveTests[4](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, false, false, true, true, null, null, []) 0.614s passed
basicPositiveTests[5](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.268s passed
basicPositiveTests[6](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.252s passed
basicPositiveTests[7](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, true, false, false, null, null, []) 0.255s passed
basicPositiveTests[8](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, false, false, true, true, null, null, []) 0.573s passed
basicPositiveTests[9](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) 0.231s passed
testFilePathsWithMapFile 0.002s passed
testIsOutputMapHeaderValid 0s passed
testNoRgInfoSanitize 0.221s passed
testOutputByReadGroupWithOutputMap[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) 0.434s passed
testOutputByReadGroupWithOutputMap[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) 0.621s passed
testOutputByReadGroupWithOutputMap[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) 0.580s passed
testSampleLibraryOverride[0](NewSample, null) 0.096s passed
testSampleLibraryOverride[1](null, NewLibrary) 0.097s passed
testSampleLibraryOverride[2](NewSample, NewLibrary) 0.096s passed
testSanitizeAndDeduplicateRecords[0](.sam) 0.364s passed
testSanitizeAndDeduplicateRecords[1](.bam) 0.955s passed
testSanitizeAndDeduplicateRecords[2](.cram) 0.763s passed
testSingleEndSanitize[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) 0.315s passed
testSingleEndSanitize[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) 0.935s passed
testSingleEndSanitize[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) 0.742s passed

Standard error

[May 27, 2025 at 4:34:22 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:23 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:23 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:23 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:24 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:24 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:24 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:24 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:25 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:25 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:25 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:26 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:26 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:26 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:27 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:27 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:29 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:30 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:30 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464
[May 27, 2025 at 4:34:32 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=958398464