[May 27, 2025 at 4:36:15 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664
[May 27, 2025 at 4:36:15 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664
[May 27, 2025 at 4:36:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664
16:36:16.237 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.237 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
16:36:16.237 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:16.237 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:36:16.237 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:36:16.237 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 4:36:16 PM UTC
16:36:16.237 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.237 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.237 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:16.238 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:16.238 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:16.238 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:16.238 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
16:36:16.238 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
16:36:16.238 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
16:36:16.238 INFO CollectMultipleMetricsSpark - Requester pays: disabled
16:36:16.238 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
16:36:16.238 INFO CollectMultipleMetricsSpark - Initializing engine
16:36:16.238 INFO CollectMultipleMetricsSpark - Done initializing engine
16:36:16.238 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
WARNING 2025-05-27 16:36:16 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 16:36:16 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
16:36:16.239 INFO MemoryStore - Block broadcast_3408 stored as values in memory (estimated size 37.8 KiB, free 1906.9 MiB)
16:36:16.240 INFO MemoryStore - Block broadcast_3408_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1906.9 MiB)
16:36:16.240 INFO BlockManagerInfo - Added broadcast_3408_piece0 in memory on localhost:46629 (size: 8.4 KiB, free: 1917.6 MiB)
16:36:16.240 INFO SparkContext - Created broadcast 3408 from broadcast at SamSource.java:78
16:36:16.241 INFO MemoryStore - Block broadcast_3409 stored as values in memory (estimated size 306.3 KiB, free 1906.6 MiB)
16:36:16.247 INFO MemoryStore - Block broadcast_3409_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1906.6 MiB)
16:36:16.247 INFO BlockManagerInfo - Added broadcast_3409_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.6 MiB)
16:36:16.247 INFO SparkContext - Created broadcast 3409 from newAPIHadoopFile at SamSource.java:108
WARNING 2025-05-27 16:36:16 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
WARNING 2025-05-27 16:36:16 SamReaderFactory Unable to detect file format from input URL or stream, assuming SAM format.
16:36:16.249 INFO MemoryStore - Block broadcast_3410 stored as values in memory (estimated size 37.8 KiB, free 1906.5 MiB)
16:36:16.250 INFO MemoryStore - Block broadcast_3410_piece0 stored as bytes in memory (estimated size 8.4 KiB, free 1906.5 MiB)
16:36:16.250 INFO BlockManagerInfo - Added broadcast_3410_piece0 in memory on localhost:46629 (size: 8.4 KiB, free: 1917.6 MiB)
16:36:16.250 INFO SparkContext - Created broadcast 3410 from broadcast at SamSource.java:78
16:36:16.251 INFO MemoryStore - Block broadcast_3411 stored as values in memory (estimated size 306.3 KiB, free 1906.2 MiB)
16:36:16.257 INFO MemoryStore - Block broadcast_3411_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1906.2 MiB)
16:36:16.257 INFO BlockManagerInfo - Added broadcast_3411_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.5 MiB)
16:36:16.257 INFO SparkContext - Created broadcast 3411 from newAPIHadoopFile at SamSource.java:108
16:36:16.259 INFO FileInputFormat - Total input files to process : 1
16:36:16.263 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
16:36:16.263 INFO DAGScheduler - Got job 892 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
16:36:16.263 INFO DAGScheduler - Final stage: ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
16:36:16.263 INFO DAGScheduler - Parents of final stage: List()
16:36:16.263 INFO DAGScheduler - Missing parents: List()
16:36:16.263 INFO DAGScheduler - Submitting ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
16:36:16.263 INFO MemoryStore - Block broadcast_3412 stored as values in memory (estimated size 34.8 KiB, free 1906.1 MiB)
16:36:16.264 INFO MemoryStore - Block broadcast_3412_piece0 stored as bytes in memory (estimated size 14.6 KiB, free 1906.1 MiB)
16:36:16.264 INFO BlockManagerInfo - Added broadcast_3412_piece0 in memory on localhost:46629 (size: 14.6 KiB, free: 1917.5 MiB)
16:36:16.264 INFO SparkContext - Created broadcast 3412 from broadcast at DAGScheduler.scala:1580
16:36:16.264 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2485 (MapPartitionsRDD[10243] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
16:36:16.264 INFO TaskSchedulerImpl - Adding task set 2485.0 with 1 tasks resource profile 0
16:36:16.264 INFO TaskSetManager - Starting task 0.0 in stage 2485.0 (TID 1916) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
16:36:16.264 INFO Executor - Running task 0.0 in stage 2485.0 (TID 1916)
16:36:16.266 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.sam:0+44008
16:36:16.267 INFO Executor - Finished task 0.0 in stage 2485.0 (TID 1916). 946 bytes result sent to driver
16:36:16.267 INFO TaskSetManager - Finished task 0.0 in stage 2485.0 (TID 1916) in 3 ms on localhost (executor driver) (1/1)
16:36:16.267 INFO TaskSchedulerImpl - Removed TaskSet 2485.0, whose tasks have all completed, from pool
16:36:16.267 INFO DAGScheduler - ResultStage 2485 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.004 s
16:36:16.267 INFO DAGScheduler - Job 892 is finished. Cancelling potential speculative or zombie tasks for this job
16:36:16.267 INFO TaskSchedulerImpl - Killing all running tasks in stage 2485: Stage finished
16:36:16.267 INFO DAGScheduler - Job 892 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.004492 s
16:36:16.267 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 4:36:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664
16:36:16.271 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.271 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
16:36:16.271 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:16.271 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:36:16.271 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:36:16.271 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 4:36:16 PM UTC
16:36:16.271 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.271 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.272 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:16.272 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:16.272 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:16.272 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:16.272 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
16:36:16.272 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
16:36:16.272 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
16:36:16.272 INFO CollectMultipleMetricsSpark - Requester pays: disabled
16:36:16.272 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
16:36:16.272 INFO CollectMultipleMetricsSpark - Initializing engine
16:36:16.272 INFO CollectMultipleMetricsSpark - Done initializing engine
16:36:16.272 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
16:36:16.273 INFO MemoryStore - Block broadcast_3413 stored as values in memory (estimated size 306.3 KiB, free 1905.8 MiB)
16:36:16.280 INFO MemoryStore - Block broadcast_3413_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1905.7 MiB)
16:36:16.280 INFO BlockManagerInfo - Added broadcast_3413_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.4 MiB)
16:36:16.280 INFO SparkContext - Created broadcast 3413 from newAPIHadoopFile at PathSplitSource.java:96
16:36:16.300 INFO MemoryStore - Block broadcast_3414 stored as values in memory (estimated size 306.3 KiB, free 1905.4 MiB)
16:36:16.306 INFO MemoryStore - Block broadcast_3414_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1905.4 MiB)
16:36:16.306 INFO BlockManagerInfo - Added broadcast_3414_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.4 MiB)
16:36:16.306 INFO SparkContext - Created broadcast 3414 from newAPIHadoopFile at PathSplitSource.java:96
16:36:16.326 INFO FileInputFormat - Total input files to process : 1
16:36:16.329 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
16:36:16.329 INFO DAGScheduler - Got job 893 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
16:36:16.329 INFO DAGScheduler - Final stage: ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
16:36:16.329 INFO DAGScheduler - Parents of final stage: List()
16:36:16.329 INFO DAGScheduler - Missing parents: List()
16:36:16.329 INFO DAGScheduler - Submitting ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
16:36:16.346 INFO MemoryStore - Block broadcast_3415 stored as values in memory (estimated size 478.0 KiB, free 1904.9 MiB)
16:36:16.348 INFO MemoryStore - Block broadcast_3415_piece0 stored as bytes in memory (estimated size 208.0 KiB, free 1904.7 MiB)
16:36:16.348 INFO BlockManagerInfo - Added broadcast_3415_piece0 in memory on localhost:46629 (size: 208.0 KiB, free: 1917.1 MiB)
16:36:16.348 INFO SparkContext - Created broadcast 3415 from broadcast at DAGScheduler.scala:1580
16:36:16.348 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2486 (MapPartitionsRDD[10256] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
16:36:16.348 INFO TaskSchedulerImpl - Adding task set 2486.0 with 1 tasks resource profile 0
16:36:16.349 INFO TaskSetManager - Starting task 0.0 in stage 2486.0 (TID 1917) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9772 bytes)
16:36:16.349 INFO Executor - Running task 0.0 in stage 2486.0 (TID 1917)
16:36:16.378 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.bam:0+8071
16:36:16.381 INFO Executor - Finished task 0.0 in stage 2486.0 (TID 1917). 989 bytes result sent to driver
16:36:16.381 INFO TaskSetManager - Finished task 0.0 in stage 2486.0 (TID 1917) in 32 ms on localhost (executor driver) (1/1)
16:36:16.381 INFO TaskSchedulerImpl - Removed TaskSet 2486.0, whose tasks have all completed, from pool
16:36:16.381 INFO DAGScheduler - ResultStage 2486 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.052 s
16:36:16.381 INFO DAGScheduler - Job 893 is finished. Cancelling potential speculative or zombie tasks for this job
16:36:16.382 INFO TaskSchedulerImpl - Killing all running tasks in stage 2486: Stage finished
16:36:16.382 INFO DAGScheduler - Job 893 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.052586 s
16:36:16.382 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 4:36:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664
16:36:16.386 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.386 INFO CollectMultipleMetricsSpark - org.broadinstitute.hellbender.tools.spark.pipelines.metrics vUnavailable
16:36:16.386 INFO CollectMultipleMetricsSpark - For support and documentation go to https://software.broadinstitute.org/gatk/
16:36:16.386 INFO CollectMultipleMetricsSpark - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
16:36:16.386 INFO CollectMultipleMetricsSpark - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
16:36:16.386 INFO CollectMultipleMetricsSpark - Start Date/Time: May 27, 2025 at 4:36:16 PM UTC
16:36:16.386 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.386 INFO CollectMultipleMetricsSpark - ------------------------------------------------------------
16:36:16.386 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.COMPRESSION_LEVEL : 2
16:36:16.386 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
16:36:16.386 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
16:36:16.386 INFO CollectMultipleMetricsSpark - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
16:36:16.386 INFO CollectMultipleMetricsSpark - Deflater: IntelDeflater
16:36:16.386 INFO CollectMultipleMetricsSpark - Inflater: IntelInflater
16:36:16.386 INFO CollectMultipleMetricsSpark - GCS max retries/reopens: 20
16:36:16.386 INFO CollectMultipleMetricsSpark - Requester pays: disabled
16:36:16.386 WARN CollectMultipleMetricsSpark -
?[1m?[31m !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
Warning: CollectMultipleMetricsSpark is a BETA tool and is not yet ready for use in production
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?[0m
16:36:16.386 INFO CollectMultipleMetricsSpark - Initializing engine
16:36:16.386 INFO CollectMultipleMetricsSpark - Done initializing engine
16:36:16.386 INFO CollectMultipleMetricsSpark - Spark verbosity set to INFO (see --spark-verbosity argument)
16:36:16.388 INFO MemoryStore - Block broadcast_3416 stored as values in memory (estimated size 600.0 B, free 1904.7 MiB)
16:36:16.388 INFO MemoryStore - Block broadcast_3416_piece0 stored as bytes in memory (estimated size 211.0 B, free 1904.7 MiB)
16:36:16.389 INFO BlockManagerInfo - Added broadcast_3416_piece0 in memory on localhost:46629 (size: 211.0 B, free: 1917.1 MiB)
16:36:16.389 INFO SparkContext - Created broadcast 3416 from broadcast at CramSource.java:114
16:36:16.389 INFO MemoryStore - Block broadcast_3417 stored as values in memory (estimated size 306.3 KiB, free 1904.4 MiB)
16:36:16.396 INFO MemoryStore - Block broadcast_3417_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1904.4 MiB)
16:36:16.396 INFO BlockManagerInfo - Added broadcast_3417_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.1 MiB)
16:36:16.396 INFO SparkContext - Created broadcast 3417 from newAPIHadoopFile at PathSplitSource.java:96
16:36:16.410 INFO MemoryStore - Block broadcast_3418 stored as values in memory (estimated size 600.0 B, free 1904.4 MiB)
16:36:16.411 INFO MemoryStore - Block broadcast_3418_piece0 stored as bytes in memory (estimated size 211.0 B, free 1904.3 MiB)
16:36:16.411 INFO BlockManagerInfo - Added broadcast_3418_piece0 in memory on localhost:46629 (size: 211.0 B, free: 1917.1 MiB)
16:36:16.411 INFO SparkContext - Created broadcast 3418 from broadcast at CramSource.java:114
16:36:16.411 INFO MemoryStore - Block broadcast_3419 stored as values in memory (estimated size 306.3 KiB, free 1904.1 MiB)
16:36:16.418 INFO MemoryStore - Block broadcast_3419_piece0 stored as bytes in memory (estimated size 64.4 KiB, free 1904.0 MiB)
16:36:16.418 INFO BlockManagerInfo - Added broadcast_3419_piece0 in memory on localhost:46629 (size: 64.4 KiB, free: 1917.0 MiB)
16:36:16.418 INFO SparkContext - Created broadcast 3419 from newAPIHadoopFile at PathSplitSource.java:96
16:36:16.432 INFO FileInputFormat - Total input files to process : 1
16:36:16.435 INFO SparkContext - Starting job: count at CollectMultipleMetricsSparkIntegrationTest.java:130
16:36:16.435 INFO DAGScheduler - Got job 894 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) with 1 output partitions
16:36:16.435 INFO DAGScheduler - Final stage: ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130)
16:36:16.435 INFO DAGScheduler - Parents of final stage: List()
16:36:16.435 INFO DAGScheduler - Missing parents: List()
16:36:16.435 INFO DAGScheduler - Submitting ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193), which has no missing parents
16:36:16.446 INFO MemoryStore - Block broadcast_3420 stored as values in memory (estimated size 330.5 KiB, free 1903.7 MiB)
16:36:16.448 INFO MemoryStore - Block broadcast_3420_piece0 stored as bytes in memory (estimated size 143.8 KiB, free 1903.5 MiB)
16:36:16.448 INFO BlockManagerInfo - Added broadcast_3420_piece0 in memory on localhost:46629 (size: 143.8 KiB, free: 1916.9 MiB)
16:36:16.449 INFO SparkContext - Created broadcast 3420 from broadcast at DAGScheduler.scala:1580
16:36:16.449 INFO DAGScheduler - Submitting 1 missing tasks from ResultStage 2487 (MapPartitionsRDD[10267] at filter at CollectMultipleMetricsSpark.java:193) (first 15 tasks are for partitions Vector(0))
16:36:16.449 INFO TaskSchedulerImpl - Adding task set 2487.0 with 1 tasks resource profile 0
16:36:16.449 INFO TaskSetManager - Starting task 0.0 in stage 2487.0 (TID 1918) (localhost, executor driver, partition 0, PROCESS_LOCAL, 9773 bytes)
16:36:16.449 INFO Executor - Running task 0.0 in stage 2487.0 (TID 1918)
16:36:16.471 INFO NewHadoopRDD - Input split: file:/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/metrics/analysis/CollectInsertSizeMetrics/insert_size_metrics_test.cram:0+8617
16:36:16.475 INFO Executor - Finished task 0.0 in stage 2487.0 (TID 1918). 989 bytes result sent to driver
16:36:16.475 INFO TaskSetManager - Finished task 0.0 in stage 2487.0 (TID 1918) in 26 ms on localhost (executor driver) (1/1)
16:36:16.476 INFO TaskSchedulerImpl - Removed TaskSet 2487.0, whose tasks have all completed, from pool
16:36:16.476 INFO DAGScheduler - ResultStage 2487 (count at CollectMultipleMetricsSparkIntegrationTest.java:130) finished in 0.041 s
16:36:16.476 INFO DAGScheduler - Job 894 is finished. Cancelling potential speculative or zombie tasks for this job
16:36:16.476 INFO TaskSchedulerImpl - Killing all running tasks in stage 2487: Stage finished
16:36:16.476 INFO DAGScheduler - Job 894 finished: count at CollectMultipleMetricsSparkIntegrationTest.java:130, took 0.040739 s
16:36:16.476 INFO CollectMultipleMetricsSpark - Shutting down engine
[May 27, 2025 at 4:36:16 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.metrics.CollectMultipleMetricsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1692401664