Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.266s |
passed |
| testASEReadCounterImproperPairs |
3.199s |
passed |
| testASEReadCounterMinDepth70 |
0.187s |
passed |
| testASEReadCounterMultipleContexts |
0.122s |
passed |
| testASEReadCounterNonRefAllele |
0.123s |
passed |
| testASEReadCounterWarnings |
0.188s |
passed |
| testASEReadCounterWithCountOverlaps |
0.186s |
passed |
| testASEReadCounterWithCountReads |
0.186s |
passed |
| testASEReadCounterWithHighMQ |
0.187s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.186s |
passed |
| testASEReadCounterWithLowMQ |
0.185s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.191s |
passed |
Standard output
--------------------------------------------------------------------------------
[16:43:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:10] Executing test ASEReadCounterIntegrationTest:test improper pairs
--------------------------------------------------------------------------------
[16:43:13] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:14] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:14] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:14] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:14] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[16:43:15] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 4:43:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208
[May 27, 2025 at 4:43:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1686110208