Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.963s |
passed |
| testSplitsFixNDN |
0.091s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.657s |
passed |
| testSplitsTargetRegionFunctionality |
0.189s |
passed |
| testSplitsWithOverhangs |
0.383s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.320s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.299s |
passed |
| testSplitsWithOverhangsNotClipping |
0.267s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.435s |
passed |
Standard output
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[16:43:40] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[16:43:40] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:43:42] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[16:43:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[16:43:42] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[16:43:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[16:43:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[16:43:43] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 4:43:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 4:43:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=721420288