Class org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTableIntegrationTest
Tests
| Test |
Duration |
Result |
| testComplexVariantsToTable |
0.075s |
passed |
| testComplexVariantsToTableFail |
0.067s |
passed |
| testGenotypeFields |
0.075s |
passed |
| testGenotypeFieldsWithInline |
0.070s |
passed |
| testInputFileFail |
0.066s |
passed |
| testListFields |
0.067s |
passed |
| testMoltenOutput |
0.065s |
passed |
| testMoltenOutputWithGenotypeFields |
0.069s |
passed |
| testMoltenOutputWithMultipleAlleles |
0.072s |
passed |
| testMultiAllelicOneRecord |
0.068s |
passed |
| testMultiAllelicSplitRecords |
0.068s |
passed |
| testMultiallelicGenotypeFields |
0.070s |
passed |
| testNoFieldsSpecifiedFormatFieldInHeaderNoSamples |
0.070s |
passed |
| testNoFieldsSpecifiedNoSamples |
0.065s |
passed |
| testNoFieldsSpecifiedWithSamples |
0.061s |
passed |
| testNoSamples |
0.062s |
passed |
| testNoSamplesSoNoGenotypes |
0.065s |
passed |
| testOutputFileFail |
0.068s |
passed |
| testSplitMultiallelicFields |
0.220s |
passed |
| testUnfilteredGenotypeFields |
0.069s |
passed |
| testUnfilteredGenotypeFieldsFail |
0.070s |
passed |
Standard output
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable
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[16:45:59] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testGenotypeFields
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testMoltenOutput
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithGenotypeFields
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testMoltenOutputWithMultipleAlleles
--------------------------------------------------------------------------------
[16:45:59] Executing test VariantsToTableIntegrationTest:testMultiAllelicOneRecord
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testMultiAllelicSplitRecords
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testMultiallelicGenotypeFields
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testNoSamples
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testComplexVariantsToTable-FAIL
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testGenotypeFieldsWithInline
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields
--------------------------------------------------------------------------------
[16:46:00] Executing test VariantsToTableIntegrationTest:testUnfilteredGenotypeFields-FAIL
Standard error
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688
[May 27, 2025 at 4:46:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.VariantsToTable done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1140850688