Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.332s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.020s	passed
testGetCompatibleHeader	0.026s	passed
testGetConflictingHeader	0.021s	passed
testIteratorOverlapping	0.026s	passed
testNoDictionaryForAllInputs	0.023s	passed
testNoDictionaryForOneInput	0.022s	passed
testNoDictionaryForOnlyInput	0.023s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.021s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.021s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.024s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.023s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.020s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.019s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.022s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.021s	passed
testVariantsFromBundleOrder	-	ignored
Standard error

18:16:47.440 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.440 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.441 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.441 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.441 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.441 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.441 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.441 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.441 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.441 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.441 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.441 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.441 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.441 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.442 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.442 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.442 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.443 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:16:47.444 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.460 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.460 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.460 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.460 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.460 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.460 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.460 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.460 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.460 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.460 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.460 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.461 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.461 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.461 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.461 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.461 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.461 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.462 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.464 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:16:47.468 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.468 INFO  ProgressMeter - Starting traversal
18:16:47.468 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.471 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
18:16:47.471 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:16:47.471 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.487 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.487 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.487 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.487 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.487 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.488 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.488 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.488 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.488 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.488 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.488 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.488 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.488 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.488 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.488 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.488 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.488 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.489 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:16:47.491 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
18:16:47.492 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.510 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:16:47.510 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.510 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.510 INFO  TestMultiVariantWalkerIterator - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.510 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.510 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.510 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:16:47.511 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:16:47.511 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.511 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.511 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.511 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.511 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
18:16:47.511 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
18:16:47.511 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
18:16:47.511 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
18:16:47.511 INFO  TestMultiVariantWalkerIterator - Initializing engine
18:16:47.513 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
18:16:47.515 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
18:16:47.517 INFO  TestMultiVariantWalkerIterator - Done initializing engine
18:16:47.517 INFO  ProgressMeter - Starting traversal
18:16:47.517 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.518 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
18:16:47.518 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
18:16:47.518 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.535 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.536 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.536 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.536 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.536 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.536 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.536 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.536 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.536 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.536 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.536 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.536 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.536 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.536 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.537 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.537 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.537 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.538 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
18:16:47.540 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
18:16:47.542 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
18:16:47.542 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
18:16:47.542 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.558 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.558 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.558 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.558 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.558 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.558 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.558 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.558 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.558 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.559 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.559 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.559 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.559 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.559 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.559 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.559 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.559 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.560 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.561 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
18:16:47.562 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
18:16:47.563 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.563 INFO  ProgressMeter - Starting traversal
18:16:47.563 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.564 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:16:47.564 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:16:47.564 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.583 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.584 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.584 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.584 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.584 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.584 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.584 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.584 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.584 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.584 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.584 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.584 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.584 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.584 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.584 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.584 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.584 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.586 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
18:16:47.586 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
18:16:47.586 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.587 INFO  ProgressMeter - Starting traversal
18:16:47.587 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.587 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
18:16:47.587 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
18:16:47.587 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.603 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.603 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.603 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.603 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.603 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.604 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.604 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.604 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.604 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.604 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.604 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.604 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.604 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.604 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.604 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.604 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.604 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.605 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:16:47.607 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.607 INFO  ProgressMeter - Starting traversal
18:16:47.607 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.608 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:16:47.608 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:16:47.608 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.624 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.625 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.625 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.625 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.625 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.625 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.625 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.625 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.625 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.625 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.625 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.625 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.625 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.626 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.626 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.626 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.626 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.627 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.628 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.629 INFO  ProgressMeter - Starting traversal
18:16:47.629 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.630 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
18:16:47.630 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
18:16:47.630 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.647 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.647 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.647 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.647 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.647 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.647 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.647 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.647 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.647 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.647 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.647 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.647 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.647 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.648 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.648 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.648 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.648 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.649 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.650 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:16:47.652 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.652 INFO  ProgressMeter - Starting traversal
18:16:47.652 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.653 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:16:47.653 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:16:47.653 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.669 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.669 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.669 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.669 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.669 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.669 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.669 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.670 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.670 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.670 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.670 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.670 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.670 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.670 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.670 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.670 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.670 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.671 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
18:16:47.673 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
18:16:47.675 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.675 INFO  ProgressMeter - Starting traversal
18:16:47.675 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.676 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:16:47.676 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:16:47.676 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.692 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.692 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.693 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.693 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.693 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.693 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.693 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.693 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.693 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.693 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.693 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.693 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.693 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.693 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.693 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.693 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.693 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.695 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:16:47.696 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:16:47.696 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.696 INFO  ProgressMeter - Starting traversal
18:16:47.696 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.697 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
18:16:47.697 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
18:16:47.697 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.712 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.712 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.712 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.712 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.712 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.713 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.713 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.713 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.713 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.713 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.713 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.713 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.713 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.713 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.713 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.713 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.713 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.715 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.716 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:16:47.716 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.716 INFO  ProgressMeter - Starting traversal
18:16:47.716 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.717 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
18:16:47.717 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
18:16:47.717 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.732 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.732 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.732 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.732 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.732 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.733 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.733 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.733 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.733 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.733 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.733 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.733 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.733 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.733 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.733 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.733 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.733 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.734 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.736 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:16:47.737 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:16:47.737 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.738 INFO  ProgressMeter - Starting traversal
18:16:47.738 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.738 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
18:16:47.738 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
18:16:47.738 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056
18:16:47.754 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.754 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-6-g06789f4-SNAPSHOT
18:16:47.754 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:16:47.754 INFO  TestMultiVariantWalker - Executing as root@9bb9f17fa524 on Linux v6.11.0-1014-azure amd64
18:16:47.754 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
18:16:47.754 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:16:47 PM GMT
18:16:47.754 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.754 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:16:47.754 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:16:47.754 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:16:47.754 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:16:47.754 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:16:47.754 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:16:47.754 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:16:47.755 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:16:47.755 INFO  TestMultiVariantWalker - Requester pays: disabled
18:16:47.755 INFO  TestMultiVariantWalker - Initializing engine
18:16:47.756 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:16:47.757 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:16:47.759 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
18:16:47.759 INFO  TestMultiVariantWalker - Done initializing engine
18:16:47.759 INFO  ProgressMeter - Starting traversal
18:16:47.759 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:16:47.759 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
18:16:47.759 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
18:16:47.759 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:16:47 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1684013056