Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.120s |
passed |
| testBedGZIndex |
0.133s |
passed |
| testBedIndex |
0.120s |
passed |
| testCompressedBCF2_2Index |
0.119s |
passed |
| testEnsemblGtfIndex |
0.336s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@53d5e209, [Ljava.lang.String;@4b7bbcd5, [Ljava.lang.String;@46ef5990) |
0.005s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@6772f9c7, [Ljava.lang.String;@c85cbf7, [Ljava.lang.String;@2dec2b42) |
0.004s |
passed |
| testGVCFIndex |
0.155s |
passed |
| testGVCFTreatedAsVCFIndex |
0.121s |
passed |
| testIndexBCFFileGZ |
0.114s |
passed |
| testIndexNonFeatureFileGZ |
0.113s |
passed |
| testNewGencodeLiftoverGtfFile |
0.134s |
passed |
| testSAMPileupGZIndex |
0.124s |
passed |
| testUncompressedBCF2_2Index |
0.120s |
passed |
| testVCFGZIPIndex |
0.120s |
passed |
| testVCFGZIPIndex_inferredName |
0.113s |
passed |
| testVCFGZIndex_inferredName |
0.120s |
passed |
| testVCFGZIndex_tabix |
0.132s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.118s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.157s |
passed |
| testVCFIndex |
0.122s |
passed |
| testVCFIndex_cannotWrite |
0.119s |
passed |
| testVCFIndex_inferredName |
0.120s |
passed |
| testVCFIndex_missingFile |
0.115s |
passed |
| testVCFWithNoRecords |
0.113s |
passed |
Standard error
[May 27, 2025 at 6:20:22 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:22 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:22 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:22 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:23 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:24 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:25 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:25 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:25 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:25 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:20:25 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000