Class org.broadinstitute.hellbender.tools.copynumber.ModelSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.copynumber > ModelSegmentsIntegrationTest
33

tests
0

failures
0

ignored
47.793s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testInvalidDataModesMultipleSamples[0]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.340s passed
testInvalidDataModesMultipleSamples[10]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.104s passed
testInvalidDataModesMultipleSamples[11]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.105s passed
testInvalidDataModesMultipleSamples[12]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.118s passed
testInvalidDataModesMultipleSamples[13]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.108s passed
testInvalidDataModesMultipleSamples[14]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.111s passed
testInvalidDataModesMultipleSamples[1]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.259s passed
testInvalidDataModesMultipleSamples[2]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 0.130s passed
testInvalidDataModesMultipleSamples[3]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.367s passed
testInvalidDataModesMultipleSamples[4]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.277s passed
testInvalidDataModesMultipleSamples[5](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.260s passed
testInvalidDataModesMultipleSamples[6]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.376s passed
testInvalidDataModesMultipleSamples[7](null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.334s passed
testInvalidDataModesMultipleSamples[8]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.263s passed
testInvalidDataModesMultipleSamples[9]([/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 0.261s passed
testInvalidDataModesSingleSample[0](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.270s passed
testInvalidDataModesSingleSample[1](null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv) 0.254s passed
testInvalidDataModesSingleSample[2](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.168s passed
testInvalidDataModesSingleSample[3](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 0.191s passed
testInvalidDataModesSingleSample[4](/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.111s passed
testInvalidDataModesSingleSample[5](null, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 0.112s passed
testMetadata 0.378s passed
testValidDataModesMultipleSamples[0](multiple-sample-cr-ac-nac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 6.456s passed
testValidDataModesMultipleSamples[1](multiple-sample-cr-ac, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.977s passed
testValidDataModesMultipleSamples[2](multiple-sample-ac-nac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.638s passed
testValidDataModesMultipleSamples[3](multiple-sample-cr, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null) 1.435s passed
testValidDataModesMultipleSamples[4](multiple-sample-ac, null, [/gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null) 5.567s passed
testValidDataModesSingleSample[0](single-sample-cr-ac-nac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 4.421s passed
testValidDataModesSingleSample[1](single-sample-cr-ac, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.583s passed
testValidDataModesSingleSample[2](single-sample-ac-nac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv) 3.920s passed
testValidDataModesSingleSample[3](single-sample-cr, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, null) 1.140s passed
testValidDataModesSingleSample[4](single-sample-ac, null, /gatkCloneMountPoint/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null) 4.759s passed

Standard error

[May 27, 2025 at 6:21:23 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:23 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:23 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:24 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:24 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:24 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:25 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:25 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:21:25 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:26 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:27 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:27 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:27 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:27 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:27 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:29 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:34 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.09 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:35 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:40 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:41 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:45 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:45 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:46 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:47 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:52 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:21:56 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:22:01 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:22:05 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:22:06 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=891289600
[May 27, 2025 at 6:22:11 PM GMT] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=891289600