Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.funcotator > FuncotateSegmentsIntegrationTest
6

tests
0

failures
0

ignored
15.366s

duration
100%

successful

Tests

Test Duration Result
testEmptyGatkCalledSegmentFile 0.213s passed
testGatkCalledSegmentFile 1.789s passed
testHg38CalledCopyRatioSegmentsGatkFile 3.672s passed
testModelSegmentsGatkFile 9.395s passed
testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) 0.156s passed
testSimpleNoOverlap 0.141s passed

Standard error

[May 27, 2025 at 6:26:11 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2378170368
[May 27, 2025 at 6:26:13 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=2378170368
[May 27, 2025 at 6:26:17 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=2378170368
[May 27, 2025 at 6:26:26 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.15 minutes.
Runtime.totalMemory()=2489319424
[May 27, 2025 at 6:26:26 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2489319424
[May 27, 2025 at 6:26:27 PM GMT] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2489319424