Class org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariatesIntegrationTest
Tests
| Test |
Duration |
Result |
| testCsvGeneration |
0.357s |
passed |
| testInGatkLiteDocker |
0.096s |
passed |
| testInOutAbsenceException[0](true, false, false, false, false) |
0.094s |
passed |
| testParameterChangeException[0](after-noDp.table.gz, Unset the default platform) |
0.235s |
passed |
| testParameterChangeException[1](after-mcs4.table.gz, Changed -mcs parameter from 2 to 4) |
0.276s |
passed |
Standard output
--------------------------------------------------------------------------------
[18:34:53] Executing test AnalyzeCovariatesIntegrationTest:testCsvGeneration
--------------------------------------------------------------------------------
[18:34:53] Executing test AnalyzeCovariatesIntegrationTest:testInGatkLiteDocker
--------------------------------------------------------------------------------
[18:34:53] Executing test AnalyzeCovariatesIntegrationTest:testInOutAbsencePresenceException
--------------------------------------------------------------------------------
[18:34:53] Executing test AnalyzeCovariatesIntegrationTest:testParameterChangeException - Unset the default platform
--------------------------------------------------------------------------------
[18:34:53] Executing test AnalyzeCovariatesIntegrationTest:testParameterChangeException - Changed -mcs parameter from 2 to 4
Standard error
[May 27, 2025 at 6:34:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1478492160
[May 27, 2025 at 6:34:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1478492160
[May 27, 2025 at 6:34:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1478492160
[May 27, 2025 at 6:34:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1478492160
[May 27, 2025 at 6:34:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.bqsr.AnalyzeCovariates done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1478492160