Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.317s |
passed |
| testASEReadCounterImproperPairs |
3.259s |
passed |
| testASEReadCounterMinDepth70 |
0.226s |
passed |
| testASEReadCounterMultipleContexts |
0.163s |
passed |
| testASEReadCounterNonRefAllele |
0.176s |
passed |
| testASEReadCounterWarnings |
0.244s |
passed |
| testASEReadCounterWithCountOverlaps |
0.250s |
passed |
| testASEReadCounterWithCountReads |
0.239s |
passed |
| testASEReadCounterWithHighMQ |
0.235s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.233s |
passed |
| testASEReadCounterWithLowMQ |
0.235s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.237s |
passed |
Standard output
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[18:40:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[18:40:46] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[18:40:49] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:50] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:50] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:50] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:50] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:51] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:40:51] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 6:40:46 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:49 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:50 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312
[May 27, 2025 at 6:40:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1480589312