Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
13.116s |
passed |
| testSplitsFixNDN |
0.133s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.738s |
passed |
| testSplitsTargetRegionFunctionality |
0.342s |
passed |
| testSplitsWithOverhangs |
0.492s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.431s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.360s |
passed |
| testSplitsWithOverhangsNotClipping |
0.432s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.556s |
passed |
Standard output
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[18:41:21] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[18:41:21] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[18:41:23] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[18:41:23] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[18:41:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[18:41:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[18:41:24] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
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[18:41:25] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 6:41:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.22 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:41:21 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:41:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:41:23 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=826277888
[May 27, 2025 at 6:41:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=679477248
[May 27, 2025 at 6:41:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=679477248
[May 27, 2025 at 6:41:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=679477248
[May 27, 2025 at 6:41:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=643825664
[May 27, 2025 at 6:41:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=553648128