Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.775s |
passed |
| testApplySNPRecalibration |
2.006s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.133s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.189s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.128s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.100s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.120s |
passed |
Standard output
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[18:43:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[18:43:51] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[18:43:53] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[18:43:53] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[18:43:54] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[18:43:54] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[May 27, 2025 at 6:43:51 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1153433600
[May 27, 2025 at 6:43:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1153433600