Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
4.309s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.009s	passed
testGetCompatibleHeader	0.018s	passed
testGetConflictingHeader	0.012s	passed
testIteratorOverlapping	0.015s	passed
testNoDictionaryForAllInputs	0.011s	passed
testNoDictionaryForOneInput	0.012s	passed
testNoDictionaryForOnlyInput	0.009s	passed
testVariantOrder[0]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.009s	passed
testVariantOrder[1]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.010s	passed
testVariantOrder[2]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.012s	passed
testVariantOrder[3]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.013s	passed
testVariantOrder[4]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.010s	passed
testVariantOrder[5]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.009s	passed
testVariantOrder[6]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.012s	passed
testVariantOrder[7]([/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.010s	passed
testVariantsFromBundleOrder[0](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_teste699d373-58be-44e7-90d1-9c69c185886edir/remote_bundle.json, 1, 14)	2.259s	passed
testVariantsFromBundleOrder[1](gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test0f49111c-f89d-48d9-a76b-ec3549035c34dir/remote_bundle.json, 2:200-600, 3)	1.879s	passed
Standard error

18:02:48.642 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.642 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.642 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.642 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.642 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.642 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.642 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.643 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.643 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.643 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.643 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.643 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.643 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.643 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.643 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.643 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.643 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.645 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:02:48.646 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.652 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.653 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.653 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.653 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.653 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.653 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.653 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.653 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.653 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.653 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.653 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.653 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.653 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.654 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.654 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.654 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.654 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.655 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.657 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:02:48.661 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.661 INFO  ProgressMeter - Starting traversal
18:02:48.661 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.664 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
18:02:48.664 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:02:48.664 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.672 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.672 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.672 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.672 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.672 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.673 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.673 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.673 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.673 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.673 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.673 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.673 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.673 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.673 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.673 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.673 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.673 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.674 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:02:48.676 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
18:02:48.677 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.683 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:02:48.683 INFO  TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.684 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.684 INFO  TestMultiVariantWalkerIterator - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.684 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.684 INFO  TestMultiVariantWalkerIterator - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.684 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:02:48.684 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
18:02:48.684 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.684 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.684 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.684 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.684 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
18:02:48.685 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
18:02:48.685 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
18:02:48.685 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
18:02:48.685 INFO  TestMultiVariantWalkerIterator - Initializing engine
18:02:48.686 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
18:02:48.689 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
18:02:48.691 INFO  TestMultiVariantWalkerIterator - Done initializing engine
18:02:48.691 INFO  ProgressMeter - Starting traversal
18:02:48.691 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.692 INFO  ProgressMeter -             unmapped              0.0                    28        1680000.0
18:02:48.692 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
18:02:48.692 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.699 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.699 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.699 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.699 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.699 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.699 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.699 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.699 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.699 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.699 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.700 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.700 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.700 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.700 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.700 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.700 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.700 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.701 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
18:02:48.702 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
18:02:48.704 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
18:02:48.704 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
18:02:48.704 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.710 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.711 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.711 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.711 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.711 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.711 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.711 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.711 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.711 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.711 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.711 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.711 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.711 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.711 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.712 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.714 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
18:02:48.715 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
18:02:48.715 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.715 INFO  ProgressMeter - Starting traversal
18:02:48.715 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.717 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
18:02:48.717 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:02:48.717 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.723 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.723 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.723 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.723 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.723 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.724 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.724 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.724 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.724 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.724 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.724 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.724 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.724 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.724 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.724 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.724 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.724 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.725 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
18:02:48.726 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
18:02:48.726 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.726 INFO  ProgressMeter - Starting traversal
18:02:48.726 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.727 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
18:02:48.727 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
18:02:48.727 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.733 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.733 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.733 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.733 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.733 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.733 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.733 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.733 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.734 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.734 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.734 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.734 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.734 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.734 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.734 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.734 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.734 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.735 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:02:48.736 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.736 INFO  ProgressMeter - Starting traversal
18:02:48.736 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.737 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:02:48.737 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:02:48.737 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.742 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.743 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.743 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.743 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.743 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.743 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.743 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.743 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.743 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.743 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.743 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.743 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.744 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.744 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.744 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.744 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.744 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.745 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.746 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.746 INFO  ProgressMeter - Starting traversal
18:02:48.746 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.746 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
18:02:48.747 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
18:02:48.747 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.752 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.752 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.752 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.752 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.753 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.753 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.753 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.753 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.753 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.753 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.753 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.753 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.753 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.753 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.753 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.753 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.753 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.754 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.755 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:02:48.757 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.757 INFO  ProgressMeter - Starting traversal
18:02:48.757 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.758 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:02:48.759 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:02:48.759 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.765 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.765 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.765 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.765 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.765 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.765 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.765 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.765 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.766 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.766 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.766 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.766 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.766 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.766 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.766 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.766 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.766 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.767 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
18:02:48.769 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
18:02:48.771 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.771 INFO  ProgressMeter - Starting traversal
18:02:48.771 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.772 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
18:02:48.772 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
18:02:48.772 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.778 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.778 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.778 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.778 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.778 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.778 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.778 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.778 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.778 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.778 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.778 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.779 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.779 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.779 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.779 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.779 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.779 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.780 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
18:02:48.781 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:02:48.781 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.781 INFO  ProgressMeter - Starting traversal
18:02:48.781 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.782 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
18:02:48.782 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
18:02:48.782 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.788 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.788 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.788 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.788 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.788 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.788 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.788 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.788 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.789 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.789 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.789 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.789 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.789 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.789 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.789 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.789 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.789 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.790 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.791 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:02:48.791 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.791 INFO  ProgressMeter - Starting traversal
18:02:48.791 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.792 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
18:02:48.792 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
18:02:48.792 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.797 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.797 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.798 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.798 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.798 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.798 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.798 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.798 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.798 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.798 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.798 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.798 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.798 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.798 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.798 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.798 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.798 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.799 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.801 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:02:48.802 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:02:48.802 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.802 INFO  ProgressMeter - Starting traversal
18:02:48.803 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.803 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
18:02:48.803 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
18:02:48.803 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:48.809 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.809 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:48.809 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:48.809 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:48.809 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:48.809 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:48 PM UTC
18:02:48.809 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.809 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:48.810 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:48.810 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:48.810 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:48.810 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:48.810 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:48.810 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:48.810 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:48.810 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:48.810 INFO  TestMultiVariantWalker - Initializing engine
18:02:48.811 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
18:02:48.812 INFO  FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
18:02:48.813 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
18:02:48.813 INFO  TestMultiVariantWalker - Done initializing engine
18:02:48.814 INFO  ProgressMeter - Starting traversal
18:02:48.814 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:48.814 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
18:02:48.814 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
18:02:48.814 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:48 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1279262720
18:02:51.504 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:51.504 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:51.504 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:51.504 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:51.505 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:51.505 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:51 PM UTC
18:02:51.505 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:51.505 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:51.505 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:51.505 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:51.505 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:51.505 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:51.505 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:51.505 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:51.506 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:51.506 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:51.506 INFO  TestMultiVariantWalker - Initializing engine
18:02:52.378 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_teste699d373-58be-44e7-90d1-9c69c185886edir/interleavedVariants_1.vcf
18:02:53.244 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_teste699d373-58be-44e7-90d1-9c69c185886edir/interleavedVariants_2.vcf
18:02:53.613 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
18:02:53.614 INFO  TestMultiVariantWalker - Done initializing engine
18:02:53.614 INFO  ProgressMeter - Starting traversal
18:02:53.614 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:53.756 INFO  ProgressMeter -             unmapped              0.0                    14           5957.4
18:02:53.756 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
18:02:53.756 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1279262720
18:02:53.762 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:53.762 INFO  TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
18:02:53.762 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
18:02:53.762 INFO  TestMultiVariantWalker - Executing as runner@pkrvmf6wy0o8zjz on Linux v6.11.0-1014-azure amd64
18:02:53.763 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
18:02:53.763 INFO  TestMultiVariantWalker - Start Date/Time: May 27, 2025 at 6:02:53 PM UTC
18:02:53.763 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:53.763 INFO  TestMultiVariantWalker - ------------------------------------------------------------
18:02:53.763 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
18:02:53.763 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
18:02:53.763 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
18:02:53.763 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
18:02:53.763 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
18:02:53.763 INFO  TestMultiVariantWalker - Inflater: IntelInflater
18:02:53.763 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
18:02:53.763 INFO  TestMultiVariantWalker - Requester pays: disabled
18:02:53.763 INFO  TestMultiVariantWalker - Initializing engine
18:02:54.445 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test0f49111c-f89d-48d9-a76b-ec3549035c34dir/interleavedVariants_1.vcf
18:02:55.045 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/remoteBundles/remote_bundle_test0f49111c-f89d-48d9-a76b-ec3549035c34dir/interleavedVariants_2.vcf
18:02:55.510 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
18:02:55.511 INFO  TestMultiVariantWalker - Done initializing engine
18:02:55.511 INFO  ProgressMeter - Starting traversal
18:02:55.511 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
18:02:55.636 INFO  ProgressMeter -             unmapped              0.0                     3           1451.6
18:02:55.636 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
18:02:55.636 INFO  TestMultiVariantWalker - Shutting down engine
[May 27, 2025 at 6:02:55 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1279262720