Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testEmptyGatkCalledSegmentFile | 0.157s | passed |
| testGatkCalledSegmentFile | 1.329s | passed |
| testHg38CalledCopyRatioSegmentsGatkFile | 3.267s | passed |
| testModelSegmentsGatkFile | 8.785s | passed |
| testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) | 0.108s | passed |
| testSimpleNoOverlap | 0.094s | passed |
Standard error
[May 27, 2025 at 6:10:31 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1988100096 [May 27, 2025 at 6:10:32 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.02 minutes. Runtime.totalMemory()=1988100096 [May 27, 2025 at 6:10:35 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.05 minutes. Runtime.totalMemory()=1988100096 [May 27, 2025 at 6:10:44 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.15 minutes. Runtime.totalMemory()=2187329536 [May 27, 2025 at 6:10:44 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2187329536 [May 27, 2025 at 6:10:44 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2187329536