Class org.broadinstitute.hellbender.tools.spark.PileupSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testFeaturesPileupHdfs[0](false) |
1.791s |
passed |
| testFeaturesPileupHdfs[1](true) |
1.482s |
passed |
| testFeaturesPileup[0](false) |
0.832s |
passed |
| testFeaturesPileup[1](true) |
0.459s |
passed |
| testInsertLengthPileup[0](false) |
0.490s |
passed |
| testInsertLengthPileup[1](true) |
0.367s |
passed |
| testSimplePileup[0](false) |
0.430s |
passed |
| testSimplePileup[1](true) |
0.337s |
passed |
| testVerbosePileup[0](false) |
0.456s |
passed |
| testVerbosePileup[1](true) |
0.360s |
passed |
Standard error
[May 27, 2025 at 6:14:14 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1027604480
[May 27, 2025 at 6:14:15 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1027604480
[May 27, 2025 at 6:14:17 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1027604480
18:14:17.100 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 6:14:18 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=901775360
18:14:18.581 ERROR DataNode - Command processor encountered interrupt and exit.
[May 27, 2025 at 6:14:19 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=901775360
[May 27, 2025 at 6:14:19 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=901775360
[May 27, 2025 at 6:14:19 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=901775360
[May 27, 2025 at 6:14:20 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=901775360
[May 27, 2025 at 6:14:20 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=901775360
[May 27, 2025 at 6:14:21 PM UTC] org.broadinstitute.hellbender.tools.spark.PileupSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=901775360