Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.228s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.235s passed
testCountVariantsWithIntervals[10](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.225s passed
testCountVariantsWithIntervals[11](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.225s passed
testCountVariantsWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.223s passed
testCountVariantsWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.217s passed
testCountVariantsWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.211s passed
testCountVariantsWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.218s passed
testCountVariantsWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.207s passed
testCountVariantsWithIntervals[6](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.231s passed
testCountVariantsWithIntervals[7](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.225s passed
testCountVariantsWithIntervals[8](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.226s passed
testCountVariantsWithIntervals[9](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.245s passed
testNoNPRWhenOutputIsUnspecified 0.085s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.087s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.101s passed
test[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.267s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[May 27, 2025 at 6:15:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816
[May 27, 2025 at 6:15:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1432354816