Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.201s |
passed |
| testOnRealBam[0](1) |
18.791s |
passed |
| testOnRealBam[1](5) |
19.325s |
passed |
| testTwoSamples |
0.258s |
passed |
Standard error
[May 27, 2025 at 6:22:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.29 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:22:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.29 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816