Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.238s |
passed |
| testASEReadCounterImproperPairs |
3.135s |
passed |
| testASEReadCounterMinDepth70 |
0.185s |
passed |
| testASEReadCounterMultipleContexts |
0.119s |
passed |
| testASEReadCounterNonRefAllele |
0.118s |
passed |
| testASEReadCounterWarnings |
0.193s |
passed |
| testASEReadCounterWithCountOverlaps |
0.187s |
passed |
| testASEReadCounterWithCountReads |
0.186s |
passed |
| testASEReadCounterWithHighMQ |
0.189s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.186s |
passed |
| testASEReadCounterWithLowMQ |
0.192s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.196s |
passed |
Standard output
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[18:23:05] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[18:23:06] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[18:23:09] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:09] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[18:23:10] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[May 27, 2025 at 6:23:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1956642816