Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
13.841s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 7.558s passed
testCompareReadStrands[1](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, CDS, true) 1.880s passed
testConsistentWithPast[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.751s passed
testConsistentWithPast[1](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.952s passed
testConsistentWithPast[2](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 1.030s passed
testConsistentWithPast[3](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.715s passed
testConsistentWithPast[4](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.299s passed
testConsistentWithPast[5](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.225s passed
testConsistentWithPast[6](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.219s passed
testConsistentWithPast[7](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.212s passed

Standard error

[May 27, 2025 at 6:23:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:12 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1956642816
[May 27, 2025 at 6:23:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2353004544
[May 27, 2025 at 6:23:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2353004544
[May 27, 2025 at 6:23:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2726297600
[May 27, 2025 at 6:23:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2726297600
[May 27, 2025 at 6:23:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:18 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:18 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:19 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:20 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:20 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:21 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3103784960
[May 27, 2025 at 6:23:22 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3227516928
[May 27, 2025 at 6:23:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=3330277376
[May 27, 2025 at 6:23:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3330277376
[May 27, 2025 at 6:23:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3330277376
[May 27, 2025 at 6:23:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3330277376
[May 27, 2025 at 6:23:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3330277376
[May 27, 2025 at 6:23:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3330277376