Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
10.728s |
passed |
| testSplitsFixNDN |
0.077s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.428s |
passed |
| testSplitsTargetRegionFunctionality |
0.258s |
passed |
| testSplitsWithOverhangs |
0.470s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.363s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.359s |
passed |
| testSplitsWithOverhangsNotClipping |
0.350s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.388s |
passed |
Standard output
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[18:23:35] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[18:23:35] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[18:23:37] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[18:23:37] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[18:23:37] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[18:23:38] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[18:23:38] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[18:23:38] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[May 27, 2025 at 6:23:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.18 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:36 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:37 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:37 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[May 27, 2025 at 6:23:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000