Class org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest

all > org.broadinstitute.hellbender.engine > MultiVariantWalkerIntegrationTest
tests
failures
ignored
0.349s
duration
100%
successful
Tests
Standard error
Tests

Test	Duration	Result
testDuplicateSources	0.019s	passed
testGetCompatibleHeader	0.028s	passed
testGetConflictingHeader	0.019s	passed
testIteratorOverlapping	0.023s	passed
testNoDictionaryForAllInputs	0.024s	passed
testNoDictionaryForOneInput	0.021s	passed
testNoDictionaryForOnlyInput	0.017s	passed
testVariantOrder[0]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], null, 26)	0.018s	passed
testVariantOrder[1]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], null, 13)	0.018s	passed
testVariantOrder[2]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], null, 26)	0.023s	passed
testVariantOrder[3]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf], null, 26)	0.035s	passed
testVariantOrder[4]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf], 1, 14)	0.031s	passed
testVariantOrder[5]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf], 1, 7)	0.030s	passed
testVariantOrder[6]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 1, 14)	0.022s	passed
testVariantOrder[7]([/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf], 2:200-600, 3)	0.021s	passed
testVariantsFromBundleOrder	-	ignored
Standard error

14:22:04.829 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.830 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.830 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.830 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.830 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.830 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.830 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.830 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.830 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.830 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.830 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.830 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.830 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.830 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.831 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.831 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.831 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.833 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:22:04.833 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.849 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.849 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.850 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.850 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.850 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.850 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.850 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.850 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.850 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.850 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.850 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.850 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.850 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.850 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.850 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.850 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.850 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.852 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:04.854 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:22:04.858 INFO  TestMultiVariantWalker - Done initializing engine
14:22:04.858 INFO  ProgressMeter - Starting traversal
14:22:04.858 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:04.861 INFO  ProgressMeter -             unmapped              0.0                    26         520000.0
14:22:04.861 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:22:04.861 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.876 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.876 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.876 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.876 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.876 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.877 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.877 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.877 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.877 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.877 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.877 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.877 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.877 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.877 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.877 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.877 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.877 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.878 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:22:04.880 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
14:22:04.881 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.897 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:22:04.897 INFO  TestMultiVariantWalkerIterator - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.897 INFO  TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.897 INFO  TestMultiVariantWalkerIterator - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.897 INFO  TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.897 INFO  TestMultiVariantWalkerIterator - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.898 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:22:04.898 INFO  TestMultiVariantWalkerIterator - ------------------------------------------------------------
14:22:04.898 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.898 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.898 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.898 INFO  TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.898 INFO  TestMultiVariantWalkerIterator - Deflater: IntelDeflater
14:22:04.898 INFO  TestMultiVariantWalkerIterator - Inflater: IntelInflater
14:22:04.898 INFO  TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
14:22:04.898 INFO  TestMultiVariantWalkerIterator - Requester pays: disabled
14:22:04.898 INFO  TestMultiVariantWalkerIterator - Initializing engine
14:22:04.899 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
14:22:04.901 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
14:22:04.903 INFO  TestMultiVariantWalkerIterator - Done initializing engine
14:22:04.903 INFO  ProgressMeter - Starting traversal
14:22:04.903 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:04.905 INFO  ProgressMeter -             unmapped              0.0                    28         840000.0
14:22:04.905 INFO  ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
14:22:04.905 INFO  TestMultiVariantWalkerIterator - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.922 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.922 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.922 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.922 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.922 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.922 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.922 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.922 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.922 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.922 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.922 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.922 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.922 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.923 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.923 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.923 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.923 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.924 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:22:04.926 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:22:04.928 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:22:04.928 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:22:04.928 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.942 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.943 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.943 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.943 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.943 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.943 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.943 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.943 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.943 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.943 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.943 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.943 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.943 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.943 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.944 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:04.946 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
14:22:04.947 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
14:22:04.947 INFO  TestMultiVariantWalker - Done initializing engine
14:22:04.947 INFO  ProgressMeter - Starting traversal
14:22:04.947 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:04.949 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
14:22:04.949 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:22:04.949 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.964 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.964 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.964 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.964 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.964 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.964 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.964 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.964 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.964 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.964 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.964 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.964 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.964 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.964 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.964 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.964 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.965 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.966 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
14:22:04.966 WARN  MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
14:22:04.966 INFO  TestMultiVariantWalker - Done initializing engine
14:22:04.967 INFO  ProgressMeter - Starting traversal
14:22:04.967 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:04.967 INFO  ProgressMeter -             unmapped              0.0                    13         Infinity
14:22:04.967 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:22:04.967 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:04.982 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.982 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:04.982 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:04.982 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:04.982 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:04.982 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:04.982 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.982 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:04.982 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:04.982 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:04.982 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:04.982 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:04.982 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:04.982 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:04.982 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:04.983 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:04.983 INFO  TestMultiVariantWalker - Initializing engine
14:22:04.984 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:22:04.985 INFO  TestMultiVariantWalker - Done initializing engine
14:22:04.985 INFO  ProgressMeter - Starting traversal
14:22:04.985 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:04.986 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:22:04.986 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:22:04.986 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:04 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.000 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.000 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.001 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.001 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.001 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.001 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:04 PM GMT
14:22:05.001 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.001 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.001 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.001 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.001 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.001 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.001 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.001 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.003 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:05.004 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.004 INFO  ProgressMeter - Starting traversal
14:22:05.004 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.005 INFO  ProgressMeter -             unmapped              0.0                    13         780000.0
14:22:05.005 INFO  ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
14:22:05.005 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.021 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.021 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.021 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.021 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.021 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.021 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.021 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.021 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.021 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.021 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.021 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.021 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.022 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.022 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.022 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.022 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.022 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.023 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:05.024 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:22:05.026 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.026 INFO  ProgressMeter - Starting traversal
14:22:05.027 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.028 INFO  ProgressMeter -             unmapped              0.0                    26         Infinity
14:22:05.028 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:22:05.028 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.044 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.045 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.045 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.045 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.045 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.047 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.047 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.047 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.047 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.047 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.047 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.047 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.047 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.047 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.047 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.047 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.047 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.049 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
14:22:05.055 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
14:22:05.057 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.057 INFO  ProgressMeter - Starting traversal
14:22:05.058 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.059 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
14:22:05.059 INFO  ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
14:22:05.059 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.087 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.087 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.088 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.088 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.088 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.088 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.088 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.088 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.088 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.088 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.088 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.088 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.088 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.088 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.088 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.088 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.088 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.091 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
14:22:05.092 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:22:05.092 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.093 INFO  ProgressMeter - Starting traversal
14:22:05.093 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.093 INFO  ProgressMeter -             unmapped              0.0                    14         Infinity
14:22:05.093 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:22:05.093 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.119 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.119 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.119 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.119 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.119 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.120 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.120 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.120 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.120 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.120 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.120 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.120 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.120 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.120 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.120 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.120 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.120 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.121 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:05.122 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:22:05.123 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.123 INFO  ProgressMeter - Starting traversal
14:22:05.123 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.123 INFO  ProgressMeter -             unmapped              0.0                     7         Infinity
14:22:05.123 INFO  ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
14:22:05.123 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.139 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.140 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.140 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.140 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.140 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.140 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.140 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.140 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.140 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.140 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.140 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.140 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.140 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.140 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.142 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:05.143 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:22:05.145 INFO  IntervalArgumentCollection - Processing 16000 bp from intervals
14:22:05.145 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.145 INFO  ProgressMeter - Starting traversal
14:22:05.145 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.146 INFO  ProgressMeter -             unmapped              0.0                    14         840000.0
14:22:05.146 INFO  ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
14:22:05.146 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744
14:22:05.161 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.161 INFO  TestMultiVariantWalker - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:22:05.161 INFO  TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
14:22:05.161 INFO  TestMultiVariantWalker - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:22:05.161 INFO  TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:22:05.161 INFO  TestMultiVariantWalker - Start Date/Time: June 2, 2025 at 2:22:05 PM GMT
14:22:05.161 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.161 INFO  TestMultiVariantWalker - ------------------------------------------------------------
14:22:05.161 INFO  TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:22:05.161 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:22:05.161 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:22:05.162 INFO  TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:22:05.162 INFO  TestMultiVariantWalker - Deflater: IntelDeflater
14:22:05.162 INFO  TestMultiVariantWalker - Inflater: IntelInflater
14:22:05.162 INFO  TestMultiVariantWalker - GCS max retries/reopens: 20
14:22:05.162 INFO  TestMultiVariantWalker - Requester pays: disabled
14:22:05.162 INFO  TestMultiVariantWalker - Initializing engine
14:22:05.163 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
14:22:05.164 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
14:22:05.165 INFO  IntervalArgumentCollection - Processing 401 bp from intervals
14:22:05.166 INFO  TestMultiVariantWalker - Done initializing engine
14:22:05.166 INFO  ProgressMeter - Starting traversal
14:22:05.166 INFO  ProgressMeter -        Current Locus  Elapsed Minutes    Variants Processed  Variants/Minute
14:22:05.166 INFO  ProgressMeter -             unmapped              0.0                     3         Infinity
14:22:05.166 INFO  ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
14:22:05.166 INFO  TestMultiVariantWalker - Shutting down engine
[June 2, 2025 at 2:22:05 PM GMT] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1514143744