Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.096s |
passed |
| testMultiSampleBam |
0.104s |
passed |
| testUrlEncoding |
0.093s |
passed |
Standard error
14:25:03.267 INFO GetSampleName - ------------------------------------------------------------
14:25:03.267 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:25:03.267 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
14:25:03.267 INFO GetSampleName - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:25:03.267 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:25:03.267 INFO GetSampleName - Start Date/Time: June 2, 2025 at 2:25:03 PM GMT
14:25:03.267 INFO GetSampleName - ------------------------------------------------------------
14:25:03.267 INFO GetSampleName - ------------------------------------------------------------
14:25:03.267 INFO GetSampleName - HTSJDK Version: test_cram_wiring-SNAPSHOT
14:25:03.267 INFO GetSampleName - Picard Version: 3.4.0
14:25:03.267 INFO GetSampleName - Built for Spark Version: 3.5.0
14:25:03.267 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:25:03.267 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:25:03.267 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:25:03.267 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:25:03.267 INFO GetSampleName - Deflater: IntelDeflater
14:25:03.267 INFO GetSampleName - Inflater: IntelInflater
14:25:03.268 INFO GetSampleName - GCS max retries/reopens: 20
14:25:03.268 INFO GetSampleName - Requester pays: disabled
14:25:03.268 INFO GetSampleName - Initializing engine
14:25:03.270 INFO GetSampleName - Done initializing engine
14:25:03.270 INFO ProgressMeter - Starting traversal
14:25:03.270 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
14:25:03.270 INFO ProgressMeter - unmapped 0.0 0 NaN
14:25:03.270 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
14:25:03.270 INFO GetSampleName - Shutting down engine
[June 2, 2025 at 2:25:03 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:03 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
14:25:03.467 INFO GetSampleName - ------------------------------------------------------------
14:25:03.467 INFO GetSampleName - The Genome Analysis Toolkit (GATK) v4.6.2.0-7-g5749ecb-SNAPSHOT
14:25:03.467 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
14:25:03.467 INFO GetSampleName - Executing as root@7f71e7f19701 on Linux v6.11.0-1014-azure amd64
14:25:03.467 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.12+7-Ubuntu-1ubuntu222.04
14:25:03.467 INFO GetSampleName - Start Date/Time: June 2, 2025 at 2:25:03 PM GMT
14:25:03.467 INFO GetSampleName - ------------------------------------------------------------
14:25:03.467 INFO GetSampleName - ------------------------------------------------------------
14:25:03.467 INFO GetSampleName - HTSJDK Version: test_cram_wiring-SNAPSHOT
14:25:03.467 INFO GetSampleName - Picard Version: 3.4.0
14:25:03.467 INFO GetSampleName - Built for Spark Version: 3.5.0
14:25:03.467 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:25:03.467 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:25:03.467 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:25:03.467 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:25:03.468 INFO GetSampleName - Deflater: IntelDeflater
14:25:03.468 INFO GetSampleName - Inflater: IntelInflater
14:25:03.468 INFO GetSampleName - GCS max retries/reopens: 20
14:25:03.468 INFO GetSampleName - Requester pays: disabled
14:25:03.468 INFO GetSampleName - Initializing engine
14:25:03.469 INFO GetSampleName - Done initializing engine
14:25:03.469 INFO ProgressMeter - Starting traversal
14:25:03.469 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
14:25:03.469 INFO ProgressMeter - unmapped 0.0 0 NaN
14:25:03.469 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
14:25:03.469 INFO GetSampleName - Shutting down engine
[June 2, 2025 at 2:25:03 PM GMT] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712