Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.081s |
passed |
| testBedGZIndex |
0.088s |
passed |
| testBedIndex |
0.086s |
passed |
| testCompressedBCF2_2Index |
0.079s |
passed |
| testEnsemblGtfIndex |
0.231s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@54691f8a, [Ljava.lang.String;@4250e4f7, [Ljava.lang.String;@5578e13) |
0.003s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@415c1063, [Ljava.lang.String;@3a245254, [Ljava.lang.String;@15731d4f) |
0.002s |
passed |
| testGVCFIndex |
0.087s |
passed |
| testGVCFTreatedAsVCFIndex |
0.098s |
passed |
| testIndexBCFFileGZ |
0.085s |
passed |
| testIndexNonFeatureFileGZ |
0.082s |
passed |
| testNewGencodeLiftoverGtfFile |
0.086s |
passed |
| testSAMPileupGZIndex |
0.114s |
passed |
| testUncompressedBCF2_2Index |
0.095s |
passed |
| testVCFGZIPIndex |
0.083s |
passed |
| testVCFGZIPIndex_inferredName |
0.086s |
passed |
| testVCFGZIndex_inferredName |
0.083s |
passed |
| testVCFGZIndex_tabix |
0.094s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.095s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.121s |
passed |
| testVCFIndex |
0.093s |
passed |
| testVCFIndex_cannotWrite |
0.090s |
passed |
| testVCFIndex_inferredName |
0.081s |
passed |
| testVCFIndex_missingFile |
0.080s |
passed |
| testVCFWithNoRecords |
0.080s |
passed |
Standard error
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:09 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:10 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:11 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:11 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712
[June 2, 2025 at 2:25:11 PM GMT] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=589299712