Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.546s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.248s passed
testCountVariantsWithIntervals[10](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.260s passed
testCountVariantsWithIntervals[11](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.243s passed
testCountVariantsWithIntervals[1](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.251s passed
testCountVariantsWithIntervals[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.246s passed
testCountVariantsWithIntervals[3](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.239s passed
testCountVariantsWithIntervals[4](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.255s passed
testCountVariantsWithIntervals[5](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.262s passed
testCountVariantsWithIntervals[6](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.246s passed
testCountVariantsWithIntervals[7](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.272s passed
testCountVariantsWithIntervals[8](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.241s passed
testCountVariantsWithIntervals[9](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.244s passed
testNoNPRWhenOutputIsUnspecified 0.093s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.105s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.100s passed
test[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.241s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[June 2, 2025 at 2:35:29 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:29 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:31 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:31 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:31 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:32 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:32 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:32 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:32 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:33 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:33 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:33 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:33 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:34 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:34 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456
[June 2, 2025 at 2:35:34 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1054867456