Class org.broadinstitute.hellbender.tools.spark.sv.integration.StructuralVariationDiscoveryPipelineSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.sv.integration > StructuralVariationDiscoveryPipelineSparkIntegrationTest
2

tests
0

failures
1

ignored
3.218s

duration
100%

successful

Tests

Test Duration Result
testSVDiscoverPipelineRunnableLocal[0](StructuralVariationDiscoveryPipelineSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-fef-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', cnv-calls-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/hg19_DEL_cnv_calls.vcf', output-dir='/tmp/new6786801040068162287'}) 3.218s passed
testSVDiscoverPipelineRunnableMiniCluster[0](StructuralVariationDiscoveryPipelineSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-fef-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', cnv-calls-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/hg19_DEL_cnv_calls.vcf', output-dir='/tmp/new2295975108930323567'}) - ignored

Standard error

[June 2, 2025 at 2:36:52 PM GMT] org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryPipelineSpark done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=587202560